[English] 日本語
Yorodumi
- SASDC97: Ethylene Receptor 1 (DHp + CA + RD domains) (Ethylene receptor 1 ... -

+
Open data


ID or keywords:

Loading...

-
Basic information

Entry
Database: SASBDB / ID: SASDC97
SampleEthylene Receptor 1 (DHp + CA + RD domains)
  • Ethylene receptor 1 dimerization histidine phosphotransfer + catalytic ATP-binding + receiver domains (protein), ETR1_DHp-CA-RD, Arabidopsis thaliana
Function / homology
Function and homology information


ethylene receptor activity / regulation of seedling development / detection of ethylene stimulus / ethylene binding / defense response by callose deposition in cell wall / negative regulation of ethylene-activated signaling pathway / sugar mediated signaling pathway / seed dormancy process / phloem or xylem histogenesis / response to insect ...ethylene receptor activity / regulation of seedling development / detection of ethylene stimulus / ethylene binding / defense response by callose deposition in cell wall / negative regulation of ethylene-activated signaling pathway / sugar mediated signaling pathway / seed dormancy process / phloem or xylem histogenesis / response to insect / response to gibberellin / cytokinin metabolic process / response to ethylene / regulation of stomatal movement / protein histidine kinase activity / response to auxin / response to abscisic acid / hydrogen peroxide biosynthetic process / phosphorelay sensor kinase activity / histidine kinase / response to salt stress / response to molecule of bacterial origin / defense response / response to heat / defense response to bacterium / cell division / endoplasmic reticulum membrane / endoplasmic reticulum / ATP binding / metal ion binding / identical protein binding
Similarity search - Function
Ethylene receptor / Ethylene receptor 1-like, N-terminal domain / His Kinase A (phospho-acceptor) domain / His Kinase A (phosphoacceptor) domain / Signal transduction histidine kinase, dimerisation/phosphoacceptor domain / Signal transduction histidine kinase-related protein, C-terminal / Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily / Histidine kinase domain / Histidine kinase domain profile. / Response regulator receiver domain ...Ethylene receptor / Ethylene receptor 1-like, N-terminal domain / His Kinase A (phospho-acceptor) domain / His Kinase A (phosphoacceptor) domain / Signal transduction histidine kinase, dimerisation/phosphoacceptor domain / Signal transduction histidine kinase-related protein, C-terminal / Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily / Histidine kinase domain / Histidine kinase domain profile. / Response regulator receiver domain / cheY-homologous receiver domain / Signal transduction response regulator, receiver domain / Response regulatory domain profile. / CheY-like superfamily / GAF domain / Domain present in phytochromes and cGMP-specific phosphodiesterases. / GAF domain / GAF-like domain superfamily / Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase / Histidine kinase-like ATPases / Histidine kinase/HSP90-like ATPase superfamily
Similarity search - Domain/homology
Biological speciesArabidopsis thaliana (thale cress)
CitationDate: 2015 Jan 30
Title: Structural Model of the Cytosolic Domain of the Plant Ethylene Receptor 1 (ETR1)
Authors: Mayerhofer H / Panneerselvam S / Kaljunen H / Tuukkanen A / Mertens H
Contact author
  • Haydyn Mertens (EMBL-Hamburg, European Molecular Biology Laboratory (EMBL) - Hamburg outstation, Notkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany)

-
Structure visualization

Downloads & links

-
Models

-
Sample

SampleName: Ethylene Receptor 1 (DHp + CA + RD domains) / Dry vol: 53494 / Specimen concentration: 0.70-5.00 / Concentration method: A280
BufferName: 20 mM Tris 150 mM NaCl 1 mM DTT 5 mM ADP / pH: 8.8
Entity #777Name: ETR1_DHp-CA-RD / Type: protein
Description: Ethylene receptor 1 dimerization histidine phosphotransfer + catalytic ATP-binding + receiver domains
Formula weight: 44.085 / Num. of mol.: 2 / Source: Arabidopsis thaliana / References: UniProt: P49333
Sequence: TAIRARNDFL AVMNHEMRTP MHAIIALSSL LQETELTPEQ RLMVETILKS SNLLATLMND VLDLSRLEDG SLQLELGTFN LHTLFREVLN LIKPIAVVKK LPITLNLAPD LPEFVVGDEK RLMQIILNIV GNAVKFSKQG SISVTALVTK SDTRAADFFV VPTGSHFYLR ...Sequence:
TAIRARNDFL AVMNHEMRTP MHAIIALSSL LQETELTPEQ RLMVETILKS SNLLATLMND VLDLSRLEDG SLQLELGTFN LHTLFREVLN LIKPIAVVKK LPITLNLAPD LPEFVVGDEK RLMQIILNIV GNAVKFSKQG SISVTALVTK SDTRAADFFV VPTGSHFYLR VKVKDSGAGI NPQDIPKIFT KFAQTQSLAT RSSGGSGLGL AISKRFVNLM EGNIWIESDG LGKGCTAIFD VKLGISERSN ESKQSGIPKV PAIPRHSNFT GLKVLVMDEN GVSRMVTKGL LVHLGCEVTT VSSNEECLRV VSHEHKVVFM DVCMPGVENY QIALRIHEKF TKQRHQRPLL VALSGNTDKS TKEKCMSFGL DGVLLKPVSL DNIRDVLSDL LEPRVLYEGM

-
Experimental information

BeamInstrument name: DORIS III X33 / City: Hamburg / 国: Germany / Shape: 0.6 / Type of source: X-ray synchrotron / Wavelength: 0.154 Å / Dist. spec. to detc.: 3.1 mm
DetectorName: Pilatus 1M-W / Pixsize x: 0.172 mm
Scan
Title: ETR1_DHp-CA-RD / Measurement date: Oct 11, 2010 / Storage temperature: 10 °C / Cell temperature: 10 °C / Exposure time: 15 sec. / Number of frames: 8 / Unit: 1/nm /
MinMax
Q0.1383 6.0155
Distance distribution function P(R)
Sofotware P(R): GNOM 4.5a / Number of points: 349 /
MinMax
Q0.1397 2.044
P(R) point30 378
R0 13.69
Result
Type of curve: extrapolated
ExperimentalExperimental errorStandardStandard errorPorodPorod error
MW90.1 kDa24 66.4 kDa5 90.1 kDa24
Volume----144 nm34

P(R)P(R) errorGuinierGuinier error
Forward scattering, I063.6999999997 5 68.19 1
Radius of gyration, Rg4.1 nm0.1 3.98 nm0.1

MinMaxError
D-13.9 0.5
Guinier point1 71 -

+
About Yorodumi

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)

EMDB accession codes are about to change! (news from PDBe EMDB page)

  • The allocation of 4 digits for EMDB accession codes will soon come to an end. Whilst these codes will remain in use, new EMDB accession codes will include an additional digit and will expand incrementally as the available range of codes is exhausted. The current 4-digit format prefixed with “EMD-” (i.e. EMD-XXXX) will advance to a 5-digit format (i.e. EMD-XXXXX), and so on. It is currently estimated that the 4-digit codes will be depleted around Spring 2019, at which point the 5-digit format will come into force.
  • The EM Navigator/Yorodumi systems omit the EMD- prefix.

Related info.:Q: What is EMD? / ID/Accession-code notation in Yorodumi/EM Navigator

External links:EMDB Accession Codes are Changing Soon! / Contact to PDBj

+
Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary.
  • This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software).
  • Now, EM Navigator and Yorodumi are based on the updated data.

External links:wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

-
Yorodumi

Thousand views of thousand structures

  • Yorodumi is a browser for structure data from EMDB, PDB, SASBDB, etc.
  • This page is also the successor to EM Navigator detail page, and also detail information page/front-end page for Omokage search.
  • The word "yorodu" (or yorozu) is an old Japanese word meaning "ten thousand". "mi" (miru) is to see.

Related info.:EMDB / PDB / SASBDB / Comparison of 3 databanks / Yorodumi Search / Aug 31, 2016. New EM Navigator & Yorodumi / Yorodumi Papers / Jmol/JSmol / Function and homology information / Changes in new EM Navigator and Yorodumi

Read more