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Open data
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Basic information
Entry | Database: SASBDB / ID: SASDBS6 |
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![]() | Apo form of full length ObgE from E.coli (ObgE_FL)
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Function / homology | ![]() guanyl ribonucleotide binding / dormancy process / negative regulation of ribosome biogenesis / guanosine tetraphosphate binding / ribosomal large subunit binding / ribosome assembly / chromosome segregation / Hydrolases; Acting on acid anhydrides; Acting on GTP to facilitate cellular and subcellular movement / GDP binding / rRNA binding ...guanyl ribonucleotide binding / dormancy process / negative regulation of ribosome biogenesis / guanosine tetraphosphate binding / ribosomal large subunit binding / ribosome assembly / chromosome segregation / Hydrolases; Acting on acid anhydrides; Acting on GTP to facilitate cellular and subcellular movement / GDP binding / rRNA binding / GTPase activity / GTP binding / magnesium ion binding / DNA binding / cytosol Similarity search - Function |
Biological species | ![]() ![]() |
![]() | ![]() Title: Structural and Biochemical Analysis of Escherichia coli ObgE, a Central Regulator of Bacterial Persistence Authors: Gkekas S / Singh R / Shkumatov A / Messens J / Fauvart M / Verstraeten N / Michiels J |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
-Models
Model #725 | ![]() Type: dummy / Software: DAMMIN (r6293) / Radius of dummy atoms: 3.50 A / Symmetry: P1 / Chi-square value: 13.099 ![]() |
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Model #743 | ![]() Type: atomic / Software: RANCH/FULCHER/GAJOE / Radius of dummy atoms: 1.90 A / Symmetry: P1 / Chi-square value: 11.336 ![]() |
Model #744 | ![]() Type: atomic / Software: RANCH/FULCHER/GAJOE / Radius of dummy atoms: 1.90 A / Symmetry: P1 / Chi-square value: 11.336 ![]() |
Model #745 | ![]() Type: atomic / Software: RANCH/FULCHER/GAJOE / Radius of dummy atoms: 1.90 A / Symmetry: P1 / Chi-square value: 11.336 ![]() |
Model #746 | ![]() Type: atomic / Software: RANCH/FULCHER/GAJOE / Radius of dummy atoms: 1.90 A / Symmetry: P1 / Chi-square value: 11.336 ![]() |
Model #747 | ![]() Type: atomic / Software: RANCH/FULCHER/GAJOE / Radius of dummy atoms: 1.90 A / Symmetry: P1 / Chi-square value: 11.336 ![]() |
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Sample
![]() | Name: Apo form of full length ObgE from E.coli (ObgE_FL) / Specimen concentration: 10 mg/ml |
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Buffer | Name: 20 mM Hepes , 300 mM NaCl, 250 mM imidazole, 5 mM MgCl2, 2 mM DTT pH: 7.5 |
Entity #420 | Name: ObgE_FL / Type: protein / Description: GTPase ObgE/CgtA / Formula weight: 44.441 / Num. of mol.: 1 / Source: Escherichia coli (strain K12) / References: UniProt: P42641 Sequence: MKFVDEASIL VVAGDGGNGC VSFRREKYIP KGGPDGGDGG DGGDVWMEAD ENLNTLIDYR FEKSFRAERG QNGASRDCTG KRGKDVTIKV PVGTRVIDQG TGETMGDMTK HGQRLLVAKG GWHGLGNTRF KSSVNRTPRQ KTNGTPGDKR ELLLELMLLA DVGMLGMPNA ...Sequence: MKFVDEASIL VVAGDGGNGC VSFRREKYIP KGGPDGGDGG DGGDVWMEAD ENLNTLIDYR FEKSFRAERG QNGASRDCTG KRGKDVTIKV PVGTRVIDQG TGETMGDMTK HGQRLLVAKG GWHGLGNTRF KSSVNRTPRQ KTNGTPGDKR ELLLELMLLA DVGMLGMPNA GKSTFIRAVS AAKPKVADYP FTTLVPSLGV VRMDNEKSFV VADIPGLIEG AAEGAGLGIR FLKHLERCRV LLHLIDIDPI DGTDPVENAR IIISELELYS QDLATKPRWL VFNKIDLLDK VEAEEKAKAI AEALGWEDKY YLISAASGLG VKDLCWDVMT FIIENPVAQA EEAKQPEKVE FMWDDYHRQQ LEEIAEEDDE DWDDDWDEDD EEGVEFIYKR SAWSHPQFEK |
-Experimental information
Beam | Instrument name: SOLEIL SWING ![]() ![]() | |||||||||||||||||||||||||||||||||
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Detector | Name: AVIEX / Type: CCD | |||||||||||||||||||||||||||||||||
Scan |
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Distance distribution function P(R) |
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Result | Comments: The sample protein includes a C-terminal Strep-tag; frames corresponding to the peak in HPLC-SAXS run were averaged using DATAVER v0.2 (r3709)
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