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- SASDBL9: Putative DNA binding protein YeeF-CT from Bacillus subtilis (amin... -

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Basic information

Entry
Database: SASBDB / ID: SASDBL9
SamplePutative DNA binding protein YeeF-CT from Bacillus subtilis (amino acids 528-669)
  • Putative DNA binding protein (protein), YeeF-CT, Bacillus subtilis subsp. spizizenii (strain ATCC 23059 / NRRL B-14472 / W23)
Function / homologyLXG domain of WXG superfamily / LXG domain / Type VII secretion system protein EssD-like / LXG domain profile. / DNA/RNA non-specific endonuclease / DNA/RNA non-specific endonuclease superfamily / Putative DNA binding protein
Function and homology information
Biological speciesBacillus subtilis subsp. spizizenii (strain ATCC 23059 / NRRL B-14472 / W23) (bacteria)
Contact author
  • Krishan Gopal (CSIR-INSTITUTE OF MICROBIAL TECHNOLOGY, Chandigarh, India)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Models

Model #1102
Type: dummy / Software: DAMMIN and DAMAVER (2.7.2) / Radius of dummy atoms: 2.25 A / Chi-square value: 0.480

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Sample

SampleName: Putative DNA binding protein YeeF-CT from Bacillus subtilis (amino acids 528-669)
Specimen concentration: 5 mg/ml
BufferName: 20 mM HEPES 150 mM NaCl / pH: 7.5
Entity #571Name: YeeF-CT / Type: protein / Description: Putative DNA binding protein / Formula weight: 18.468 / Num. of mol.: 2
Source: Bacillus subtilis subsp. spizizenii (strain ATCC 23059 / NRRL B-14472 / W23)
References: UniProt: E0TU96_BAC
Sequence:
MGSSHHHHHH SSGLVPRSHM ASIYKTKEGY TYTTDNYGRI TSVKADLQLG EAKRNQYAQS HAGKPQDRKP DDDGGHLIAT QFKGSGQFDN IVPMNSQINR SGGRWYEMEQ EWAKALKEEP PQKVNVNIKA IYKGDSLRPD KFIVKFRIGD ADFEKVTIKN QSGG

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Experimental information

BeamInstrument name: IMTECH / City: Chandigarh / 国: India / Type of source: X-ray in house / Wavelength: 0.15418 Å
DetectorName: 1D CMOS Mythen detector / Type: Diode
Scan
Title: Putative DNA binding protein YeeF-CT from Bacillus subtilis (amino acids 528-669)
Measurement date: Aug 17, 2016 / Storage temperature: 4 °C / Cell temperature: 25 °C / Exposure time: 1800 sec. / Number of frames: 1 / Unit: 1/nm /
MinMax
Q0.1195 7.0003
Distance distribution function P(R)
Sofotware P(R): GNOM 5.0 / Number of points: 479 /
MinMax
Q0.215347 3.26934
P(R) point1 479
R0 9.5
Result
Type of curve: single_conc /
ExperimentalPorod
MW34.3 kDa34.39 kDa
Volume-55.03 nm3

P(R)P(R) errorGuinier
Forward scattering, I051470 97 51460
Radius of gyration, Rg2.69 nm0.06 2.68 nm

MinMax
D-9.5
Guinier point2 60

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