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- SASDB85: Self-processing module of iron-regulated protein FrpC (415-591) -

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ID or keywords:

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Basic information

Entry
Database: SASBDB / ID: SASDB85
SampleSelf-processing module of iron-regulated protein FrpC (415-591)
  • Iron-regulated protein FrpC (amino acids 415-591) (protein), FrpC:415-591, Neisseria meningitidis serogroup B
Function / homology
Function and homology information


cell outer membrane / toxin activity / calcium ion binding / extracellular region
Similarity search - Function
RTX toxin determinant A / Haemolysin-type calcium binding-related / Haemolysin-type calcium binding protein related domain / : / Hemolysin-type calcium-binding conserved site / Hemolysin-type calcium-binding region signature. / RTX calcium-binding nonapeptide repeat / RTX calcium-binding nonapeptide repeat (4 copies) / Serralysin-like metalloprotease, C-terminal
Similarity search - Domain/homology
Iron-regulated protein FrpC
Similarity search - Component
Biological speciesNeisseria meningitidis serogroup B (bacteria)
Contact author
  • Vojtěch Kubáň (MUNI, Masaryk University; Research group Structure and Dynamics of Proteins., Brno, Czech Republic)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Models

Model #562
Type: atomic / Software: NMR (20 structure) / Radius of dummy atoms: 1.90 A / Chi-square value: XXX / P-value: 0.000620

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Sample

SampleName: Self-processing module of iron-regulated protein FrpC (415-591)
Specimen concentration: 1.25-5.00
BufferName: Tris / Concentration: 5.00 mM / pH: 7.4 / Composition: 50 mM NaCl, 10 mM CaCl2, 0.1% NaN3
Entity #359Name: FrpC:415-591 / Type: protein
Description: Iron-regulated protein FrpC (amino acids 415-591)
Formula weight: 18.698 / Num. of mol.: 1 / Source: Neisseria meningitidis serogroup B / References: UniProt: Q9JYV5
Sequence:
PLALDLDGDG IETVATKGFS GSLFDHNRDG IRTATGWVSA DDGLLVRDLN GNGIIDNGAE LFGDNTKLAD GSFAKHGYAA LAELDSNGDN IINAADAAFQ SLRVWQDLNQ DGISQANELR TLEELGIQSL DLAYKDVNKN LGNGNTLAQQ GSYTKTNGTT AKMGDLLLAA DNLHSRFLE

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Experimental information

BeamInstrument name: Rigaku BioSAXS-1000 / Type of source: X-ray in house / Wavelength: 0.1542 Å
Scan
Title: Self-processing module of FrpC (415-591) / Measurement date: Oct 3, 2013 / Storage temperature: 30 °C / Cell temperature: 30 °C / Exposure time: 600 sec. / Number of frames: 4 / Unit: 1/nm /
MinMax
Q0.0804 4.9895
Distance distribution function P(R)
Sofotware P(R): GNOM 5.0 / Number of points: 311 /
MinMax
Q0.0181161 0.465841
P(R) point1 311
R0 45.07
Result
Type of curve: single_conc /
ExperimentalPorod
MW18.4 kDa-
Volume-20.5 nm3

P(R)P(R) errorGuinierGuinier error
Forward scattering, I00.1355 0.0005 0.14 0.0007
Radius of gyration, Rg1.643 nm0.005 1.7 nm0.05

MinMax
D-4.51
Guinier point16 47

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