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- SASDAB2: Cytochrome c from equine heart (Cytochrome c, CytoC + Heme C) -

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Open data


ID or keywords:

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Basic information

Entry
Database: SASBDB / ID: SASDAB2
SampleCytochrome c from equine heart
  • Cytochrome c (protein), CytoC, Equus caballus
  • Heme C (other), Heme C
Function / homology
Function and homology information


cytochrome c-heme linkage / cytochrome complex / mitochondrial electron transport, cytochrome c to oxygen / mitochondrial electron transport, ubiquinol to cytochrome c / apoptotic signaling pathway / mitochondrial intermembrane space / electron transfer activity / heme binding / lipid binding / metal ion binding ...cytochrome c-heme linkage / cytochrome complex / mitochondrial electron transport, cytochrome c to oxygen / mitochondrial electron transport, ubiquinol to cytochrome c / apoptotic signaling pathway / mitochondrial intermembrane space / electron transfer activity / heme binding / lipid binding / metal ion binding / identical protein binding / cytosol
Similarity search - Function
Cytochrome c, class IA/ IB / Cytochrome c / Cytochrome c family profile. / Cytochrome c-like domain / Cytochrome c-like domain superfamily
Similarity search - Domain/homology
Biological speciesEquus caballus (horse)
Contact author
  • Cy M Jeffries (EMBL-Hamburg, European Molecular Biology Laboratory (EMBL) - Hamburg outstation, Notkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Models

Model #15
Type: atomic / Software: (2.8.3) / Radius of dummy atoms: 1.90 A / Comment: 1AKK / Chi-square value: 1.068
Search similar-shape structures of this assembly by Omokage search (details)

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Sample

SampleName: Cytochrome c from equine heart / Purity method: gel filtration / Sample MW: 35.3 kDa / Specimen concentration: 10 mg/ml / Concentration method: nanodrop / Entity id: 1445 / 1446
BufferName: 25 mM HEPES, 100 mM NaCl, 3% v/v glycerol / pH: 7.5
Entity #1445Name: CytoC / Type: protein / Description: Cytochrome c / Formula weight: 11.701 / Num. of mol.: 1 / Source: Equus caballus / References: UniProt: P00004
Sequence:
GDVEKGKKIF VQKCAQCHTV EKGGKHKTGP NLHGLFGRKT GQAPGFTYTD ANKNKGITWK EETLMEYLEN PKKYIPGTKM IFAGIKKKTE REDLIAYLKK ATNE
Entity #1446Name: Heme C / Type: other / Description: Heme C / Formula weight: 0.618 / Num. of mol.: 1
Sequence:
C34H34FeN4 O4

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Experimental information

BeamInstrument name: PETRA III EMBL P12 / City: Hamburg / 国: Germany / Type of source: X-ray synchrotron / Wavelength: 0.124 Å / Dist. spec. to detc.: 3 mm
DetectorName: Pilatus 6M
Scan
Title: Cytochrome c from equine heart / Measurement date: Apr 8, 2018 / Storage temperature: 20 °C / Cell temperature: 10 °C / Exposure time: 0.5 sec. / Number of frames: 58 / Unit: 1/nm /
MinMax
Q0.1512 6.921
Distance distribution function P(R)
Sofotware P(R): GNOM 5.0 / Number of points: 2185 /
MinMax
Q0.151155 6.17122
P(R) point1 2185
R0 3.66
Result
Type of curve: sec /
ExperimentalPorod
MW10 kDa8.5 kDa
Volume-11.5 nm3

P(R)P(R) errorGuinierGuinier error
Forward scattering, I01211 1.44 1206.41 1.63
Radius of gyration, Rg1.3 nm0.002 1.3 nm0.02

MinMax
D-3.66
Guinier point7 301

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