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- SASDA82: Apoferritin in PBS and glycerol (Ferritin light chain, Apoferritin) -

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Open data


ID or keywords:

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Basic information

Entry
Database: SASBDB / ID: SASDA82
SampleApoferritin in PBS and glycerol
  • Ferritin light chain (protein), Apoferritin, Equus caballus
Function / homology
Function and homology information


ferritin complex / autolysosome / ferric iron binding / autophagosome / iron ion transport / ferrous iron binding / cytoplasmic vesicle / intracellular iron ion homeostasis / iron ion binding / cytoplasm
Similarity search - Function
Ferritin iron-binding regions signature 1. / Ferritin iron-binding regions signature 2. / Ferritin, conserved site / Ferritin / Ferritin-like diiron domain / Ferritin-like diiron domain profile. / Ferritin/DPS protein domain / Ferritin-like domain / Ferritin-like / Ferritin-like superfamily
Similarity search - Domain/homology
Ferritin light chain
Similarity search - Component
Biological speciesEquus caballus (horse)
Contact author
  • Darja Ruskule (EMBL-Hamburg, European Molecular Biology Laboratory (EMBL) - Hamburg outstation, Notkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Models

Model #11
Type: atomic
Search similar-shape structures of this assembly by Omokage search (details)
Model #197
Type: dummy / Software: (r4311) / Radius of dummy atoms: 2.70 A / Chi-square value: 16.313521
Search similar-shape structures of this assembly by Omokage search (details)

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Sample

SampleName: Apoferritin in PBS and glycerol / Ext coefficient: 7.34 / Contrast: 2 / Purity method: gel filtration / Sample MW: 475.2 kDa / Specimen concentration: 18.53 mg/ml / Concentration method: nanodrop
BufferName: PBS, 50% Glycerol, 0.076 M NaCl / pH: 7.4 / Composition: Glycerol 50.000 % , NaCl 0.076 M
Entity #8Name: Apoferritin / Type: protein / Description: Ferritin light chain / Formula weight: 19.98 / Num. of mol.: 24 / Source: Equus caballus / References: UniProt: P02791
Sequence:
MSSQIRQNYS TEVEAAVNRL VNLYLRASYT YLSLGFYFDR DDVALEGVCH FFRELAEEKR EGAERLLKMQ NQRGGRALFQ DLQKPSQDEW GTTLDAMKAA IVLEKSLNQA LLDLHALGSA QADPHLCDFL ESHFLDEEVK LIKKMGDHLT NIQRLVGSQA GLGEYLFERL TLKHD

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Experimental information

BeamInstrument name: DORIS III EMBL X33 / City: Hamburg / 国: Germany / Shape: 0.6 / Type of source: X-ray synchrotron / Wavelength: 0.15 Å / Dist. spec. to detc.: 2.7 mm
DetectorName: Pilatus 1M-W / Pixsize x: 0.172 mm
Scan
Measurement date: Sep 20, 2012 / Storage temperature: 10 °C / Cell temperature: 10 °C / Exposure time: 15 sec. / Number of frames: 8 / Unit: 1/nm /
MinMax
Q0.0871 6.0145
Distance distribution function P(R)
Sofotware P(R): GNOM 5.0 / Number of points: 531 /
MinMax
Q0.275774 1.72755
P(R) point1 531
R0 12.8
Result
Type of curve: single_conc / Standard: BSA /
ExperimentalStandardPorod
MW369 kDa369 kDa-
Volume--618.7 nm3

P(R)Guinier
Forward scattering, I0257.5 356
Radius of gyration, Rg5.2 nm6.75 nm

MinMax
D-12.8
Guinier point21 38

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