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Yorodumi- PDB-8pn1: CryoEM structure of Nal1 protein, allele SPIKE, from Oryza sativa... -
+Open data
-Basic information
Entry | Database: PDB / ID: 8pn1 | |||||||||
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Title | CryoEM structure of Nal1 protein, allele SPIKE, from Oryza sativa japonica group | |||||||||
Components | Protein NARROW LEAF 1 | |||||||||
Keywords | PLANT PROTEIN / Serine protease | |||||||||
Function / homology | stem vascular tissue pattern formation / internode patterning / regulation of leaf development / leaf vascular tissue pattern formation / Peptidase S1, PA clan / nucleoplasm / cytoplasm / ADENOSINE-5'-TRIPHOSPHATE / Protein NARROW LEAF 1 Function and homology information | |||||||||
Biological species | Oryza sativa Japonica Group (Japanese rice) | |||||||||
Method | ELECTRON MICROSCOPY / single particle reconstruction / cryo EM / Resolution: 2.4 Å | |||||||||
Authors | Huang, L.Y. / Rety, S. / Xi, X.G. | |||||||||
Funding support | China, France, 2items
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Citation | Journal: Nat Plants / Year: 2024 Title: The catalytic triad of rice NARROW LEAF1 involves H234. Authors: Ling-Yun Huang / Na-Nv Liu / Wei-Fei Chen / Xia Ai / Hai-Hong Li / Ze-Lin Zhang / Xi-Miao Hou / Philippe Fossé / Olivier Mauffret / Dong-Sheng Lei / Stephane Rety / Xu-Guang Xi / Abstract: NARROW LEAF1 (NAL1) exerts a multifaceted influence on leaf morphology and crop yield. Recent crystal study proposed that histidine 233 (H233) is part of the catalytic triad. Here we report that ...NARROW LEAF1 (NAL1) exerts a multifaceted influence on leaf morphology and crop yield. Recent crystal study proposed that histidine 233 (H233) is part of the catalytic triad. Here we report that unlike suggested previously, H234 instead of H233 is a component of the catalytic triad alongside residues D291 and S385 in NAL1. Remarkably, residue 233 unexpectedly plays a pivotal role in regulating NAL1's proteolytic activity. These findings establish a strong foundation for utilizing NAL1 in breeding programs aimed at improving crop yield. | |||||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 8pn1.cif.gz | 579.4 KB | Display | PDBx/mmCIF format |
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PDB format | pdb8pn1.ent.gz | Display | PDB format | |
PDBx/mmJSON format | 8pn1.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 8pn1_validation.pdf.gz | 1.5 MB | Display | wwPDB validaton report |
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Full document | 8pn1_full_validation.pdf.gz | 1.5 MB | Display | |
Data in XML | 8pn1_validation.xml.gz | 70.9 KB | Display | |
Data in CIF | 8pn1_validation.cif.gz | 103 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/pn/8pn1 ftp://data.pdbj.org/pub/pdb/validation_reports/pn/8pn1 | HTTPS FTP |
-Related structure data
Related structure data | 17766MC 8pmeC 8pmgC 8pmiC 8pmlC 8pmmC 8pn2C M: map data used to model this data C: citing same article (ref.) |
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Similar structure data | Similarity search - Function & homologyF&H Search |
-Links
-Assembly
Deposited unit |
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments: Ens-ID: ens_1
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