+Open data
-Basic information
Entry | Database: PDB / ID: 7sqk | ||||||
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Title | Cryo-EM structure of the human augmin complex | ||||||
Components |
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Keywords | CELL CYCLE / Cell Division / Mitosis / Microtubules | ||||||
Function / homology | Function and homology information HAUS complex / regulation of microtubule nucleation / nuclear microtubule / microtubule minus-end binding / mitotic spindle microtubule / microtubule nucleation / thioesterase binding / centrosome cycle / spindle assembly / Loss of Nlp from mitotic centrosomes ...HAUS complex / regulation of microtubule nucleation / nuclear microtubule / microtubule minus-end binding / mitotic spindle microtubule / microtubule nucleation / thioesterase binding / centrosome cycle / spindle assembly / Loss of Nlp from mitotic centrosomes / Loss of proteins required for interphase microtubule organization from the centrosome / Recruitment of mitotic centrosome proteins and complexes / Recruitment of NuMA to mitotic centrosomes / Anchoring of the basal body to the plasma membrane / AURKA Activation by TPX2 / mitotic spindle / spindle pole / microtubule cytoskeleton organization / Regulation of PLK1 Activity at G2/M Transition / microtubule binding / cell division / centrosome / nucleolus / plasma membrane / cytoplasm / cytosol Similarity search - Function | ||||||
Biological species | Homo sapiens (human) | ||||||
Method | ELECTRON MICROSCOPY / single particle reconstruction / cryo EM / Resolution: 8 Å | ||||||
Authors | Gabel, C.A. / Chang, L. | ||||||
Funding support | 1items
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Citation | Journal: Nat Commun / Year: 2022 Title: Molecular architecture of the augmin complex. Authors: Clinton A Gabel / Zhuang Li / Andrew G DeMarco / Ziguo Zhang / Jing Yang / Mark C Hall / David Barford / Leifu Chang / Abstract: Accurate segregation of chromosomes during mitosis depends on the correct assembly of the mitotic spindle, a bipolar structure composed mainly of microtubules. The augmin complex, or homologous to ...Accurate segregation of chromosomes during mitosis depends on the correct assembly of the mitotic spindle, a bipolar structure composed mainly of microtubules. The augmin complex, or homologous to augmin subunits (HAUS) complex, is an eight-subunit protein complex required for building robust mitotic spindles in metazoa. Augmin increases microtubule density within the spindle by recruiting the γ-tubulin ring complex (γ-TuRC) to pre-existing microtubules and nucleating branching microtubules. Here, we elucidate the molecular architecture of augmin by single particle cryo-electron microscopy (cryo-EM), computational methods, and crosslinking mass spectrometry (CLMS). Augmin's highly flexible structure contains a V-shaped head and a filamentous tail, with the head existing in either extended or contracted conformational states. Our work highlights how cryo-EM, complemented by computational advances and CLMS, can elucidate the structure of a challenging protein complex and provides insights into the function of augmin in mediating microtubule branching nucleation. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 7sqk.cif.gz | 534.7 KB | Display | PDBx/mmCIF format |
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PDB format | pdb7sqk.ent.gz | 434 KB | Display | PDB format |
PDBx/mmJSON format | 7sqk.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 7sqk_validation.pdf.gz | 665.8 KB | Display | wwPDB validaton report |
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Full document | 7sqk_full_validation.pdf.gz | 695.1 KB | Display | |
Data in XML | 7sqk_validation.xml.gz | 74.4 KB | Display | |
Data in CIF | 7sqk_validation.cif.gz | 115.2 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/sq/7sqk ftp://data.pdbj.org/pub/pdb/validation_reports/sq/7sqk | HTTPS FTP |
-Related structure data
Related structure data | 25387MC M: map data used to model this data C: citing same article (ref.) |
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Similar structure data | Similarity search - Function & homologyF&H Search |
-Links
-Assembly
Deposited unit |
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1 |
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-Components
-HAUS augmin-like complex subunit ... , 7 types, 7 molecules ABCEFGH
#1: Protein | Mass: 31910.348 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Gene: HAUS1, CCDC5, HEIC / Production host: Trichoplusia ni (cabbage looper) / References: UniProt: Q96CS2 |
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#2: Protein | Mass: 32487.453 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Gene: HAUS2, C15orf25, CEP27 / Production host: Trichoplusia ni (cabbage looper) / References: UniProt: Q9NVX0 |
#3: Protein | Mass: 69740.180 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Gene: HAUS3, C4orf15 / Production host: Trichoplusia ni (cabbage looper) / References: UniProt: Q68CZ6 |
#5: Protein | Mass: 71783.406 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Gene: HAUS5, KIAA0841 / Production host: Trichoplusia ni (cabbage looper) / References: UniProt: O94927 |
#6: Protein | Mass: 50250.039 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Gene: HAUS6, DGT6, FAM29A, KIAA1574 / Production host: Trichoplusia ni (cabbage looper) / References: UniProt: Q7Z4H7 |
#7: Protein | Mass: 40819.152 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Gene: HAUS7, UCHL5IP, UIP1 / Production host: Trichoplusia ni (cabbage looper) / References: UniProt: Q99871 |
#8: Protein | Mass: 44922.430 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Gene: HAUS8, HICE1 / Production host: Trichoplusia ni (cabbage looper) / References: UniProt: Q9BT25 |
-Protein , 1 types, 1 molecules D
#4: Protein | Mass: 37269.805 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Gene: HAUS4, C14orf94 / Production host: Trichoplusia ni (cabbage looper) / References: UniProt: Q9H6D7 |
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-Experimental details
-Experiment
Experiment | Method: ELECTRON MICROSCOPY |
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EM experiment | Aggregation state: PARTICLE / 3D reconstruction method: single particle reconstruction |
-Sample preparation
Component | Name: Holocomplex of the Homologous to Augment Subunits Complex Type: COMPLEX / Entity ID: all / Source: RECOMBINANT | |||||||||||||||||||||||||
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Molecular weight | Value: 378 kDa/nm / Experimental value: NO | |||||||||||||||||||||||||
Source (natural) | Organism: Homo sapiens (human) | |||||||||||||||||||||||||
Source (recombinant) | Organism: Trichoplusia ni (cabbage looper) | |||||||||||||||||||||||||
Buffer solution | pH: 8 | |||||||||||||||||||||||||
Buffer component |
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Specimen | Conc.: 0.05 mg/ml / Embedding applied: NO / Shadowing applied: NO / Staining applied: NO / Vitrification applied: YES | |||||||||||||||||||||||||
Specimen support | Grid material: GOLD / Grid type: Quantifoil R2/2 | |||||||||||||||||||||||||
Vitrification | Instrument: FEI VITROBOT MARK III / Cryogen name: ETHANE / Humidity: 100 % / Chamber temperature: 277 K |
-Electron microscopy imaging
Experimental equipment | Model: Titan Krios / Image courtesy: FEI Company |
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Microscopy | Model: FEI TITAN KRIOS |
Electron gun | Electron source: FIELD EMISSION GUN / Accelerating voltage: 300 kV / Illumination mode: FLOOD BEAM |
Electron lens | Mode: BRIGHT FIELD / Nominal magnification: 64000 X / Nominal defocus max: 1500 nm / Nominal defocus min: 800 nm / Calibrated defocus min: 800 nm / Calibrated defocus max: 1500 nm / Cs: 2.7 mm / C2 aperture diameter: 100 µm |
Specimen holder | Cryogen: NITROGEN / Specimen holder model: FEI TITAN KRIOS AUTOGRID HOLDER |
Image recording | Electron dose: 50 e/Å2 / Detector mode: SUPER-RESOLUTION / Film or detector model: GATAN K2 SUMMIT (4k x 4k) |
EM imaging optics | Energyfilter name: GIF Bioquantum / Energyfilter slit width: 20 eV / Phase plate: VOLTA PHASE PLATE |
-Processing
Software | Name: PHENIX / Version: 1.19.1_4122: / Classification: refinement | ||||||||||||||||||||||||
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EM software |
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CTF correction | Type: PHASE FLIPPING ONLY | ||||||||||||||||||||||||
Particle selection | Num. of particles selected: 2000000 | ||||||||||||||||||||||||
3D reconstruction | Resolution: 8 Å / Resolution method: FSC 0.143 CUT-OFF / Num. of particles: 447000 / Algorithm: FOURIER SPACE / Symmetry type: POINT | ||||||||||||||||||||||||
Refine LS restraints |
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