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- ChemComp-JPX: [(2~{S})-3-[[(2~{S})-3-[(2~{S},3~{S},4~{S},5~{S},6~{S})-6-(hydrox... -

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Basic information

EntryDatabase: PDB chemical components / ID: JPX
NameName: [(2~{S})-3-[[(2~{S})-3-[(2~{S},3~{S},4~{S},5~{S},6~{S})-6-(hydroxymethyl)-4,5-bis(oxidanyl)-3-(propanoylamino)oxan-2-yl]oxy-1-oxidanylidene-1-(pentadecylamino)propan-2-yl]oxy-oxidanyl- ...Name: [(2~{S})-3-[[(2~{S})-3-[(2~{S},3~{S},4~{S},5~{S},6~{S})-6-(hydroxymethyl)-4,5-bis(oxidanyl)-3-(propanoylamino)oxan-2-yl]oxy-1-oxidanylidene-1-(pentadecylamino)propan-2-yl]oxy-oxidanyl-phosphoryl]oxy-2-octanoyloxy-propyl] decanoate

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Chemical information

Composition
Formula: C48H91N2O15P / Number of atoms: 157 / Formula weight: 967.214 / Formal charge: 0
Others

7zgy

Type: non-polymer / PDB classification: HETAIN / Three letter code: JPX / Ideal coordinates details: Corina / Model coordinates PDB-ID: 7ZGY
History
Create componentMay 6, 2022
Modify coordinatesMay 6, 2022
Initial releaseJul 13, 2022
Modify descriptorAug 22, 2022
External linksUniChem / ChemSpider / Wikipedia search / Google search

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Details

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SMILES

CACTVS 3.385CCCCCCCCCCCCCCCNC(=O)[CH](CO[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1NC(=O)CC)O[P](O)(=O)OC[CH](COC(=O)CCCCCCCCC)OC(=O)CCCCCCC
OpenEye OEToolkits 2.0.7CCCCCCCCCCCCCCCNC(=O)C(COC1C(C(C(C(O1)CO)O)O)NC(=O)CC)OP(=O)(O)OCC(COC(=O)CCCCCCCCC)OC(=O)CCCCCCC

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SMILES CANONICAL

CACTVS 3.385CCCCCCCCCCCCCCCNC(=O)[C@H](CO[C@H]1O[C@@H](CO)[C@@H](O)[C@@H](O)[C@@H]1NC(=O)CC)O[P](O)(=O)OC[C@H](COC(=O)CCCCCCCCC)OC(=O)CCCCCCC
OpenEye OEToolkits 2.0.7CCCCCCCCCCCCCCCNC(=O)[C@H](CO[C@@H]1[C@H]([C@@H]([C@@H]([C@@H](O1)CO)O)O)NC(=O)CC)OP(=O)(O)OC[C@H](COC(=O)CCCCCCCCC)OC(=O)CCCCCCC

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InChI

InChI 1.06InChI=1S/C48H91N2O15P/c1-5-9-12-15-17-18-19-20-21-22-24-27-30-33-49-47(57)40(37-61-48-44(50-41(52)8-4)46(56)45(55)39(34-51)64-48)65-66(58,59)62-36-38(63-43(54)32-29-25-14-11-7-3)35-60-42(53)31-28-26-23-16-13-10-6-2/h38-40,44-46,48,51,55-56H,5-37H2,1-4H3,(H,49,57)(H,50,52)(H,58,59)/t38-,39-,40-,44-,45+,46-,48-/m0/s1

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InChIKey

InChI 1.06BORXCJRMZBMSCX-GUINJWSRSA-N

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PDB entries

Showing all 3 items

PDB-7zgy:
S-layer Deinoxanthin Binding Complex, C3 symmetry

PDB-8acq:
S-layer Deinoxanthin-Binding Complex (SDBC), subunit DR_2577 assembled with its SOD DR_0644

PDB-8agd:
Full SDBC and SOD assembly

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