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- EMDB-75910: Bacteriophage Goslar Peripheral Baseplate -

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ID or keywords:

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Basic information

Entry
Database: EMDB / ID: EMD-75910
TitleBacteriophage Goslar Peripheral Baseplate
Map data
Sample
  • Virus: Goslarvirus
    • Protein or peptide: Virion structural protein
    • Protein or peptide: Virion structural protein
KeywordsTail Assembly / VIRAL PROTEIN
Function / homology: / Family of unknown function (DUF7193) / : / Family of unknown function (DUF7208) / Virion structural protein / Virion structural protein
Function and homology information
Biological speciesGoslarvirus
Methodsingle particle reconstruction / cryo EM / Resolution: 7.88 Å
AuthorsBasu D / Gu Y / Corbett KD
Funding support United States, 1 items
OrganizationGrant numberCountry
Howard Hughes Medical Institute (HHMI)Emerging Pathogens Initiative United States
CitationJournal: To Be Published
Title: Bacteriophage Goslar Peripheral Baseplate
Authors: Basu D / Gu Y / Corbett KD
History
DepositionMar 6, 2026-
Header (metadata) releaseAug 19, 2026-
Map releaseAug 19, 2026-
UpdateAug 19, 2026-
Current statusAug 19, 2026Processing site: RCSB / Status: Released

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Structure visualization

Supplemental images

emd_75910.png

Downloads & links

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Map

FileDownload / File: emd_75910.map.gz / Format: CCP4 / Size: 824 MB / Type: IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)
Projections & slices

Image control

Size
Brightness
Contrast
Others
AxesZ (Sec.)Y (Row.)X (Col.)
1.87 Å/pix.
x 600 pix.
= 1119.6 Å		1.87 Å/pix.
x 600 pix.
= 1119.6 Å		1.87 Å/pix.
x 600 pix.
= 1119.6 Å

Surface

Projections

Slices (1/3)

Slices (1/2)

Slices (2/3)

Images are generated by Spider.

Voxel sizeX=Y=Z: 1.866 Å
Density

Histogram

Histogram (log scale)
Contour LevelBy AUTHOR: 0.15
Minimum - Maximum-0.44088164 - 1.1207504
Average (Standard dev.)-0.0018645512 (±0.040505342)
SymmetrySpace group: 1
Details

EMDB XML:

Map geometry
Axis orderXYZ
Origin000
Dimensions600600600
Spacing600600600
CellA=B=C: 1119.6 Å
α=β=γ: 90.0 °

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Supplemental data

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Half map: #1

Fileemd_75910_half_map_1.map
Projections & Slices
AxesZYX

Projections

Slices (1/2)
Density Histograms

Histogram

Histogram (log scale)

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Half map: #2

Fileemd_75910_half_map_2.map
Projections & Slices
AxesZYX

Projections

Slices (1/2)
Density Histograms

Histogram

Histogram (log scale)

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Sample components

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Entire : Goslarvirus

EntireName: Goslarvirus
Components
  • Virus: Goslarvirus
    • Protein or peptide: Virion structural protein
    • Protein or peptide: Virion structural protein

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Supramolecule #1: Goslarvirus

SupramoleculeName: Goslarvirus / type: virus / ID: 1 / Parent: 0 / Macromolecule list: all / NCBI-ID: 2733105 / Sci species name: Goslarvirus / Virus type: VIRION / Virus isolate: STRAIN / Virus enveloped: No / Virus empty: No

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Macromolecule #1: Virion structural protein

MacromoleculeName: Virion structural protein / type: protein_or_peptide / ID: 1 / Number of copies: 10 / Enantiomer: LEVO
Source (natural)Organism: Goslarvirus
Molecular weightTheoretical: 32.893969 KDa
SequenceString: MASTQIRATD RIVRTIIGGQ VQTNLTLGLP HAWEEHSTLN EKLQIQSKVY PEGNPAVRYF CIGNQGHEFI RNANGIPSSM PIAHEASDL SPWKIKPFVM REVGNDLTTD ERAKFGLRRI ETLESGKKYI CYYGRRIDFD NVVRSMRYTK YVDGVAQTIE W HPTDKNLN ...String:
MASTQIRATD RIVRTIIGGQ VQTNLTLGLP HAWEEHSTLN EKLQIQSKVY PEGNPAVRYF CIGNQGHEFI RNANGIPSSM PIAHEASDL SPWKIKPFVM REVGNDLTTD ERAKFGLRRI ETLESGKKYI CYYGRRIDFD NVVRSMRYTK YVDGVAQTIE W HPTDKNLN PTRPDIPTTG ILVATGEYYD YSCKVSLVWT PWDINEYLNV AKLTEGGEEY AVISEIGMVS AGDKIVRADD GQ GSAFDMN EIVGAQVTDL ISTYHNLYTT NDTLTLKYDL GALEARKAGP TGAEILP

UniProtKB: Virion structural protein

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Macromolecule #2: Virion structural protein

MacromoleculeName: Virion structural protein / type: protein_or_peptide / ID: 2 / Number of copies: 3 / Enantiomer: LEVO
Source (natural)Organism: Goslarvirus
Molecular weightTheoretical: 99.74493 KDa
SequenceString: MVLNASNPTA QYLINHAALN VNCRPLMDNQ HRIKMRRITG KTGAVKNFTA WHRTFNLPDD TNTFHVFVIG RHMGEDFNVG AGRLWWREL SKFCEVKGSY YNIYTEDGKE FPLTLTWTGN LENETMLVCV LDQPNIADLG VGNYYWRTYL NADFAEGYPS Y TKPTGREV ...String:
MVLNASNPTA QYLINHAALN VNCRPLMDNQ HRIKMRRITG KTGAVKNFTA WHRTFNLPDD TNTFHVFVIG RHMGEDFNVG AGRLWWREL SKFCEVKGSY YNIYTEDGKE FPLTLTWTGN LENETMLVCV LDQPNIADLG VGNYYWRTYL NADFAEGYPS Y TKPTGREV HVLGGIVTSS TQVLQWQRQL YAWRKKIQET GIGWTHCSIN GEAVEDIPPS SFKIGDSIQV IYDGTVVHRY SF RVEDLKT YNSDLDKKVK YLIHPPKDEA DTKIRYRDDV DIYVKGPNGK GRYYHTNQEN SIRMLTHRDY GIPVDYVSYF VER VDGAES LRDLTLEVVV RDSGLKTQLT FEHNRIHELY KLPDDVIVGA MLEQNANIPE FFARTLEASD YTRIMRNKES NITI DMVTS AYGYNAMAKL VADSPQRVTD DMGTPTAEVP WGLRANATFF EYDSDGLLLG ITQHPAGRHF YPQYETTSYV EGRSG VGGR TLDYVMGVAD VPIREWASYR CYSVNLRNGQ PVANTWKDVT DDASVVTEEN GVIKWSLDGR KQTGLVLFDT YFLAYK TTI QHRNHTVWLD VTTGIDVEYP LPFEPGQIEV WLGDEQATKS YSLVRDIDYI VKWPTIVINA KRYFGEGNTH TVTVRCT GF PRTDLTGETV YDTGWTMHNQ LSYDDVFNVR DDHVVRIVVG GRIYDRSEVV TAEDTQYPAD IKVNDGVPYA IYHVIAPI R GLVNTDTYYL RDKSLETDKR VEDYMSLYFP RVKYDTPVTI ENKYQLISPT LMAVTYDLIN GVIDPDPDMQ DVKLMDFME PYKWFYDYDP ALCNYDWRMV SIHPHDSWTP LEVTVKQLRF LERVSREFLK DRVDFTKFYT IKGE

UniProtKB: Virion structural protein

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Experimental details

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Structure determination

Methodcryo EM
Processingsingle particle reconstruction
Aggregation stateparticle

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Sample preparation

BufferpH: 7.5
VitrificationCryogen name: ETHANE / Chamber humidity: 95 % / Chamber temperature: 277 K / Instrument: FEI VITROBOT MARK II

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Electron microscopy

MicroscopeTFS KRIOS
Image recordingFilm or detector model: GATAN K3 BIOQUANTUM (6k x 4k) / Average electron dose: 50.0 e/Å2
Electron beamAcceleration voltage: 300 kV / Electron source: FIELD EMISSION GUN
Electron opticsIllumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD / Nominal defocus max: 2.0 µm / Nominal defocus min: 1.2 µm
Experimental equipment
Model: Titan Krios / Image courtesy: FEI Company

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Image processing

CTF correctionSoftware - Name: cryoSPARC / Type: PHASE FLIPPING AND AMPLITUDE CORRECTION
Startup modelType of model: INSILICO MODEL
Final reconstructionResolution.type: BY AUTHOR / Resolution: 7.88 Å / Resolution method: FSC 0.143 CUT-OFF / Software - Name: cryoSPARC / Number images used: 33234
Initial angle assignmentType: MAXIMUM LIKELIHOOD
Final angle assignmentType: MAXIMUM LIKELIHOOD
FSC plot (resolution estimation)

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