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- EMDB-52576: High resolution structure of the thermophilic 60S ribosomal subun... -

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Basic information

Entry
Database: EMDB / ID: EMD-52576
TitleHigh resolution structure of the thermophilic 60S ribosomal subunit of Chaetomium thermophilum
Map data
Sample
  • Complex: 60S subunit
    • RNA: x 4 types
    • Protein or peptide: x 46 types
  • Ligand: x 6 types
Keywords60S ribosomal subunit thermophilic eukaryote RNA modification pseudouridine / RIBOSOME
Function / homology
Function and homology information


regulation of cytoplasmic translational initiation / RNA polymerase I core factor complex / dolichyl-diphosphooligosaccharide-protein glycotransferase / dolichyl-diphosphooligosaccharide-protein glycotransferase activity / oligosaccharyltransferase complex / preribosome / : / RNA polymerase I core promoter sequence-specific DNA binding / nucleolar large rRNA transcription by RNA polymerase I / ribosomal large subunit export from nucleus ...regulation of cytoplasmic translational initiation / RNA polymerase I core factor complex / dolichyl-diphosphooligosaccharide-protein glycotransferase / dolichyl-diphosphooligosaccharide-protein glycotransferase activity / oligosaccharyltransferase complex / preribosome / : / RNA polymerase I core promoter sequence-specific DNA binding / nucleolar large rRNA transcription by RNA polymerase I / ribosomal large subunit export from nucleus / protein kinase activator activity / protein-RNA complex assembly / post-translational protein modification / cellular response to amino acid starvation / ribosomal large subunit biogenesis / maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) / large ribosomal subunit / ribosome biogenesis / 5S rRNA binding / ribosomal large subunit assembly / large ribosomal subunit rRNA binding / cytosolic large ribosomal subunit / cytoplasmic translation / negative regulation of translation / rRNA binding / protein ubiquitination / structural constituent of ribosome / ribosome / translation / ribonucleoprotein complex / mRNA binding / RNA binding / zinc ion binding / metal ion binding / cytosol
Similarity search - Function
Gcn1, N-terminal / : / : / : / Generalcontrol nonderepressible 1 (Gcn1) N-terminal / Stalled ribosome sensor GCN1-like, HEAT repeats / Fungal GCN1-like, HEAT repeats / Stalled ribosome sensor GCN1 N-terminal / Stalled ribosome sensor GCN1-like, HEAT repeats / Transcription initiation factor Rrn7, Zinc-finger ...Gcn1, N-terminal / : / : / : / Generalcontrol nonderepressible 1 (Gcn1) N-terminal / Stalled ribosome sensor GCN1-like, HEAT repeats / Fungal GCN1-like, HEAT repeats / Stalled ribosome sensor GCN1 N-terminal / Stalled ribosome sensor GCN1-like, HEAT repeats / Transcription initiation factor Rrn7, Zinc-finger / RNA polymerase I transcription initiation factor TAF1B/Rrn7 / : / : / Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 / Rrn7/TAF1B, N-terminal cyclin domain / Rrn7/TAF1B, C-terminal cyclin domain / E-Z type HEAT repeats / PBS lyase HEAT-like repeat / Elongation factor 3/GNC1 HEAT repeat / EF3 N-terminal HEAT repeat / Centrosomal protein CEP104-like, TOG domain / : / STT3/PglB/AglB core domain / Parkin co-regulated protein / TOG domain / Parkin co-regulated protein / TOG / : / Oligosaccharyl transferase, STT3 subunit / Oligosaccharyl transferase STT3, N-terminal / : / : / HEAT repeat profile. / HEAT, type 2 / 60s Acidic ribosomal protein / 60S acidic ribosomal protein P0 / : / Ribosomal protein L30e / Ribosomal protein L28e / 50S ribosomal protein L10, insertion domain superfamily / : / 60S ribosomal protein L10P, insertion domain / Insertion domain in 60S ribosomal protein L10P / Ribosomal L28e/Mak16 / Ribosomal L28e protein family / Ribosomal protein L41 / Ribosomal protein L41 / Ribosomal protein L13e, conserved site / Ribosomal protein L13e signature. / Ribosomal protein L27e, conserved site / Ribosomal protein L27e signature. / Ribosomal protein L22e / Ribosomal protein L22e superfamily / Ribosomal L22e protein family / Ribosomal protein L38e / Ribosomal protein L38e superfamily / Ribosomal L38e protein family / Ribosomal protein L13e / Ribosomal protein L13e / Ribosomal protein L19, eukaryotic / Ribosomal protein L10e, conserved site / Ribosomal protein L44e signature. / Ribosomal protein L10e signature. / Ribosomal protein L19/L19e conserved site / Ribosomal protein L19e signature. / : / 60S ribosomal protein L18a/ L20, eukaryotes / Ribosomal protein L6e signature. / Ribosomal protein L10e / Ribosomal protein L34e, conserved site / Ribosomal protein L34e signature. / Ribosomal protein L18/L18-A/B/e, conserved site / Ribosomal protein L18e signature. / Ribosomal protein L5 eukaryotic, C-terminal / Ribosomal L18 C-terminal region / Ribosomal protein L23/L25, N-terminal / Ribosomal protein L23, N-terminal domain / : / Ribosomal L40e family / Ribosomal protein L44e / Ribosomal protein L44 / Ribosomal protein L30e signature 1. / Ribosomal protein L36e signature. / 50S ribosomal protein L18Ae/60S ribosomal protein L20 and L18a / Ribosomal_L40e / Ribosomal protein L40e / Ribosomal protein L40e superfamily / Ribosomal protein L35Ae, conserved site / Ribosomal protein 50S-L18Ae/60S-L20/60S-L18A / Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A / Ribosomal protein L35Ae signature. / Eukaryotic Ribosomal Protein L27, KOW domain / Ribosomal protein 60S L18 and 50S L18e / Ribosomal protein L27e / Ribosomal protein L27e superfamily / Ribosomal L27e protein family / : / Ribosomal Protein L6, KOW domain / Ribosomal protein L30e signature 2. / Ribosomal protein L30e, conserved site
Similarity search - Domain/homology
Large ribosomal subunit protein uL3 / 60S ribosomal protein L26-like protein / Ribosomal protein L15 / 60S ribosomal protein L27 / 60S ribosomal protein L6 / Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3 / 60S ribosomal protein l9-like protein / 60S ribosomal protein l21-like protein / Ribosomal protein L37 / 60S ribosomal protein L24-like protein ...Large ribosomal subunit protein uL3 / 60S ribosomal protein L26-like protein / Ribosomal protein L15 / 60S ribosomal protein L27 / 60S ribosomal protein L6 / Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3 / 60S ribosomal protein l9-like protein / 60S ribosomal protein l21-like protein / Ribosomal protein L37 / 60S ribosomal protein L24-like protein / 60S ribosomal protein L14-like protein / 60S ribosomal protein L2-like protein / 60S ribosomal protein L25-like protein / 60S ribosomal protein L43-like protein / 60S ribosomal protein L32-like protein / Putative ribosomal protein / 60S ribosomal protein L13 / Ribosomal protein L18-like protein / Ribosomal protein L19 / 60S ribosomal protein L8 / 60S ribosomal protein L36 / 60S ribosomal protein L44-like protein / 60S ribosomal protein L20 / 60S ribosomal protein l33-like protein / Putative 60S ribosomal protein / 60S ribosomal protein L22-like protein / Large ribosomal subunit protein uL18 / 60S ribosomal protein l30-like protein / 60S ribosomal protein L10-like protein / 60S ribosomal protein L4-like protein / 60S ribosomal protein l7-like protein / Ribosomal protein l34-like protein / 60S ribosomal protein L38-like protein / 60S ribosomal protein L12-like protein / 60S acidic ribosomal protein P0 / Large ribosomal subunit protein uL22 / 60S ribosomal protein L16-like protein / Putative 60S ribosomal protein / Large ribosomal subunit protein uL5 / 60S ribosomal protein l23-like protein / Small ribosomal subunit protein eS32A
Similarity search - Component
Biological speciesThermochaetoides thermophila (fungus) / Thermochaetoides thermophila DSM 1495 (fungus)
Methodsingle particle reconstruction / cryo EM / Resolution: 2.38 Å
AuthorsWild K / Klein MA / Sinning I
Funding support Germany, 1 items
OrganizationGrant numberCountry
German Research Foundation (DFG) Germany
CitationJournal: Nucleic Acids Res / Year: 2025
Title: Pseudouridine increases ribosome stability in a thermophilic eukaryote.
Authors: Klemens Wild / Marius Klein / Alicia Burkard / Virginie Marchand / Nikola Kellner / Antonio Paez / Stefan Pastore / Tamer Butto / Yuri Motorin / Mark Helm / Irmgard Sinning /
Abstract: RNA modifications alter stability, folding space, and interaction network of RNA molecules. Ribosomal RNA (rRNA) modifications stabilize the structure of ribosomes and cluster around functionally ...RNA modifications alter stability, folding space, and interaction network of RNA molecules. Ribosomal RNA (rRNA) modifications stabilize the structure of ribosomes and cluster around functionally important sites such as the peptidyl transferase center, ribosomal subunit bridges, and the polypeptide tunnel. Here, we investigate the rRNA modifications of the thermophilic fungus Chaetomium thermophilum (ct), a model organism for eukaryotic thermophily and structural stability. Using LC-MS/MS, orthogonal second and third generation RNA-sequencing and high-resolution cryo-electron microscopy, we describe a cross-correlating method to assign and quantify all ct rRNA modifications. Overall, a doubling of rRNA modifications to 4% explains ribosomal thermostability with an extended distribution towards peripheral functional sites. The 2.4 Å structure of the idle ct60S ribosome, retaining nascent chains and including metal ions, polyamines, and water molecules, allows for a comprehensive structure-function analysis. Comparison with mesophilic ribosomes from Chaetomium globosum, yeast, and human highlights the significant increase of pseudouridines (Ψs). The number of Ψs linearly correlates with growth temperature, suggesting statistical modification. A ct-specific Ψ substitution forming a 'Ψ-turn' at the polypeptide tunnel exit close to the third constriction exemplifies mechanistic adaptations of the ribosome at elevated temperatures.
History
DepositionJan 17, 2025-
Header (metadata) releaseDec 17, 2025-
Map releaseDec 17, 2025-
UpdateDec 31, 2025-
Current statusDec 31, 2025Processing site: PDBe / Status: Released

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Structure visualization

Supplemental images

emd_52576.png

Downloads & links

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Map

FileDownload / File: emd_52576.map.gz / Format: CCP4 / Size: 1.9 GB / Type: IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)
Projections & slices

Image control

Size
Brightness
Contrast
Others
AxesZ (Sec.)Y (Row.)X (Col.)
0.87 Å/pix.
x 800 pix.
= 694.4 Å		0.87 Å/pix.
x 800 pix.
= 694.4 Å		0.87 Å/pix.
x 800 pix.
= 694.4 Å

Surface

Projections

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Slices (2/3)

Images are generated by Spider.

Voxel sizeX=Y=Z: 0.868 Å
Density

Histogram

Histogram (log scale)
Contour LevelBy AUTHOR: 0.175
Minimum - Maximum-0.49323064 - 1.253583
Average (Standard dev.)-0.0010260978 (±0.022180315)
SymmetrySpace group: 1
Details

EMDB XML:

Map geometry
Axis orderXYZ
Origin000
Dimensions800800800
Spacing800800800
CellA=B=C: 694.39996 Å
α=β=γ: 90.0 °

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Supplemental data

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Half map: #2

Fileemd_52576_half_map_1.map
Projections & Slices
AxesZYX

Projections

Slices (1/2)
Density Histograms

Histogram

Histogram (log scale)

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Half map: #1

Fileemd_52576_half_map_2.map
Projections & Slices
AxesZYX

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Sample components

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Entire : 60S subunit

EntireName: 60S subunit
Components
  • Complex: 60S subunit
    • RNA: 26S rRNA
    • RNA: 5S RNA
    • RNA: 5.8S RNA
    • RNA: E-site tRNA (5'-R(P*CP*CP*A)-3')
    • Protein or peptide: 60S ribosomal protein L2-like protein
    • Protein or peptide: 60S ribosomal protein L3-like protein
    • Protein or peptide: 60S ribosomal protein L4-like protein
    • Protein or peptide: 60S ribosomal protein l5-like protein
    • Protein or peptide: 60S ribosomal protein L6
    • Protein or peptide: 60S ribosomal protein l7-like protein
    • Protein or peptide: 60S ribosomal protein L8
    • Protein or peptide: 60S ribosomal protein l9-like protein
    • Protein or peptide: 60S ribosomal protein L10-like protein
    • Protein or peptide: Putative ribosomal protein
    • Protein or peptide: 60S ribosomal protein L12-like protein
    • Protein or peptide: 60S ribosomal protein L13
    • Protein or peptide: 60S ribosomal protein L14-like protein
    • Protein or peptide: Ribosomal protein L15
    • Protein or peptide: 60S ribosomal protein L16-like protein
    • Protein or peptide: 60S ribosomal protein l17-like protein
    • Protein or peptide: Ribosomal protein L18-like protein
    • Protein or peptide: Ribosomal protein L19
    • Protein or peptide: 60S ribosomal protein L20
    • Protein or peptide: 60S ribosomal protein l21-like protein
    • Protein or peptide: 60S ribosomal protein L22-like protein
    • Protein or peptide: 60S ribosomal protein l23-like protein
    • Protein or peptide: 60S ribosomal protein L24-like protein
    • Protein or peptide: 60S ribosomal protein L25-like protein
    • Protein or peptide: 60S ribosomal protein L26-like protein
    • Protein or peptide: 60S ribosomal protein L27
    • Protein or peptide: 60S ribosomal protein L28-like protein
    • Protein or peptide: 60S ribosomal protein L29
    • Protein or peptide: 60S ribosomal protein l30-like protein
    • Protein or peptide: Putative 60S ribosomal protein
    • Protein or peptide: 60S ribosomal protein L32-like protein
    • Protein or peptide: 60S ribosomal protein l33-like protein
    • Protein or peptide: Ribosomal protein l34-like protein
    • Protein or peptide: Dolichyl-diphosphooligosaccharide--protein glycotransferase
    • Protein or peptide: 60S ribosomal protein L36
    • Protein or peptide: Ribosomal protein L37
    • Protein or peptide: 60S ribosomal protein L38-like protein
    • Protein or peptide: Ribosomal protein eL39
    • Protein or peptide: Putative ribosomal protein
    • Protein or peptide: 60S ribosomal protein L41-A
    • Protein or peptide: 60S ribosomal protein L44-like protein
    • Protein or peptide: 60S ribosomal protein L43-like protein
    • Protein or peptide: Putative 60S ribosomal protein
    • Protein or peptide: 60S acidic ribosomal protein P0
    • Protein or peptide: Nascent chain C-terminus
    • Protein or peptide: Nascent chain N-terminus
  • Ligand: SPERMIDINE
  • Ligand: SPERMINE
  • Ligand: MAGNESIUM ION
  • Ligand: POTASSIUM ION
  • Ligand: ZINC ION
  • Ligand: water

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Supramolecule #1: 60S subunit

SupramoleculeName: 60S subunit / type: complex / ID: 1 / Parent: 0 / Macromolecule list: #1-#50
Source (natural)Organism: Thermochaetoides thermophila (fungus)

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Macromolecule #1: 26S rRNA

MacromoleculeName: 26S rRNA / type: rna / ID: 1 / Number of copies: 1
Source (natural)Organism: Thermochaetoides thermophila DSM 1495 (fungus)
Molecular weightTheoretical: 1.07952925 MDa
SequenceString: AGGUUGACCU CGGAUCAGGU AGGAGGACCC GCUGAACUUA AGCAUAUCAA UAAGCGGAGG AAAAGAAACC AACAGGGAUU GCCCUAGUA ACGGCGAGUG AAGCGGCAAC AGCUCAAAUU UGAAAGC(PSU)GG CUUCGGCCCG CGUUGUAAUU UGGAGAG GA UGCUUUGGGC ...String:
AGGUUGACCU CGGAUCAGGU AGGAGGACCC GCUGAACUUA AGCAUAUCAA UAAGCGGAGG AAAAGAAACC AACAGGGAUU GCCCUAGUA ACGGCGAGUG AAGCGGCAAC AGCUCAAAUU UGAAAGC(PSU)GG CUUCGGCCCG CGUUGUAAUU UGGAGAG GA UGCUUUGGGC GAGGCUCCUU CUGAGUUCCC UGGAACGGGA CGCCACAGAG GGUGAGAGCC CCGUAUAGUU GGAAGCCA A GCCUGUGUAA AGCUCCUUCG ACGAGUCGAG UAGUUUGGGA AUGCUGCUCA AAAUGGGAGG UAAAUUUCUU CUAAAGCUA AAUACCGGCC AGAGACCGAU AGCGCACAAG UAGAGUGA(PSU)C GAAAGAUGAA AAGCAC(PSU)UUG AAAAGAGG (OMG) UUAAAUAGCA CGUGAAAUUG UUGAAAGGGA AGCGCUUGUG ACCAGACUUG CGCCCGGCGG AUCAUCCGGU GUUCU CACC GGUGCACUCC GCCGGGCUCA GGCCAGCAUC GGUUCUGGCG GGGGGAUAAA GGCCCAGGGA AUGUGGCUCC UCCGGG AGU GUUAUAGCCC UGGGUGUAAU ACCCUCGCCG GGACCGAGGA CCGCGCUCUG CAAGGAUGCU GGCGUAAUGG UCACCAG CG ACCC(OMG)UCUUG (1MA)AAC(A2M)CGGAC CAA(OMG)GAGU(OMC)A AGGUUUUGCG CGAGUGUUUG GGUGUAAA A CCCGCACGCG UAAUGAAAGU GAACGUAGGU GAGAGC(PSU)UCG GCGCAUCAUC GACCGAUCCU GAUGUAUUCG GA (PSU)GGA(PSU)UU GAGUAGG(A2M)GC GU(PSU)AAGC(OMC)(PSU)U GGACCC(OMG)AAA GA(PSU)GGUGA (A2M) CUAUGCU(PSU)GG AUAGGGUGAA GCCAGAGGAA ACUCUGGUGG AGGCUCGC(A2M)G CGGUUCUG(A2M)C GUG CAAAUC GA(PSU)CGUCAAA UC(PSU)GAGCAUG G(OMG)GGCGAAAG (A2M)CUAAUCGAA CCAUCUAG(PSU)A GCUG GUUAC CGCCGAAGUU UCCC(PSU)CAGGA (PSU)AGCAGUG(PSU)C GACCUUCAGU UUUA(PSU)GAGGU AAAGCGAA (PSU) GAUUAGGGAC UCGGGGGCGA UUUUUAGCC(PSU) UCAUCCAU(PSU)C UCAAACUU(PSU)A AAUAUG(PSU)AA GAAGCCCUUG UUACUUAACU GAACGUGGGC AUUCGAAUGU AUCGACACUA GUGGGCCAU(PSU) U(PSU)UGGUAAGC (A2M)GAACUGGC GAUGCGGGAU GAACCGAACG CGGGGUUAAG GUGCCGGAGU GGACGCUCAU CAGACACCAC AAAAGGC GU UAGUACAUCU UGACAGCAGG ACGGUGGCC(A2M) UGGAAGUCGG AAUCCGCUAA GGAC(PSU)GUGUA ACAACUCACC UGCCGAAUG UACUAGCCCU GAAAAUGGAU GGCGCUCAAG CGUCCCACCC AUACCCCGCC CUCAGGGUAG AAACGAUGCC C UGAGGAGU AGGCGGCCGU GGAGGUCAGU GACGAAGCCU AGGGCGUGAG CCCGGGUCGA ACGGCCUCUA GUGCAGAU (OMC) (PSU)UGGUGGUAG U(A2M)(OMG)CAAAUAC UUCAAUGAGA AC(PSU)UGAAGGA CCGAAGUGGG GAAAGGUUC CAUGUGAACA G(OMC)GGUUGGAC AUGGGUUAGU CGAUCCUAAG CCAUAGGGAA GUUCCGUU(PSU)C AAAGGGGCAC UC GUGCCCC GUGUGGCGAA AGGGAAGCCG GUUAAUAUUC CGGCACCUGG AUGUGGGUUU UGCGCGGCAA CGCAACUGAA CGC GGAGAC GACGGCGGGG GCCCCGGGCA GAGUUCUCUU UUCUUCUUAA CGGUCUAUCA CCCUGGAAAC AGUUUGUCUG GAGA UAGGG UUUAAUGGCC GGAAGAGCCC GACACUUCUG UCGGGUCCGG UGCGCUCUCG ACGUCCCUUG AAAAUCCGCG GGAGG GAAU AAUUCUCACG CCAGGUCGUA CUCAUAACCG CAGCAGGUCC (OMC)CAAGGUGAA C(A2M)GCCUCUGG UUGAUAGA A CAA(OMU)G(PSU)AGA(PSU) AAGGGAAGUC GGCAAAAUAG AUCCGUAAC(PSU) UC(OMG)GGAAAAG GA(OMU) (PSU)GGCUC UAAGGGUUGG GCACGUUGGG CUUUGGGCGG ACGCCCUGGG AGCAGAGGGC CUCUAGCCGG GCAACCGGCC GGCGGCCCU CAGCACCCGG GGUUGAAGCC CUUAGCAGGC UUCGGCCGUC CGGCGUGCGG UUAACAACCA ACUUAGAACU G GUACGGAC AGGGGGAAUC (PSU)GAC(PSU)GUCUA AUU(1MA)AAACAU AGCAUUGCGA UGGCCAGAAA GUGGUGUUGA CGCAAUGUG AUU(PSU)CUGCC(OMC) AGUGCUCUGA AUGUCAAAGU G(A2M)AGAAAUUC AACCAAGCGC GGGUAAACG GCGGGAG(PSU)A(A2M) C(PSU)A(PSU)GAC(PSU)C(PSU) CUUAAGGUAG C(5MC)A(A2M)(A2M)UGCCU C (OMG)UCAUCUA AUUAGUGACG CGCAUGAA(UY1)G GAUUAACGAG (A2M)UUCCCACUG U(OMC)CC(PSU)AUCUA C (PSU)AUCUAGC GAAACCAC(A2M)G CCAAGGGAAC GGGCUUGGCA AAAUCAGCGG (OMG)GAAAGAAGA CCCUGUUGAG C(PSU)(OMU)GAC(OMU)CU AGUUUGACAU UGUGAAAAGA CAUAGGAGGU GUAGAAUAGG UGGGAGCUUC GGCGCCAGU GAAAUACCAC UACUCCUAUU GUUUUUUUAC UUAUUCAAUG AAGCG(OMG)GGCU GGACUUGCGU CCAACUUCUG GAGUUA AGG UCCUUCGCGG GCCGACCCGG G(PSU)UGAAGACA U(PSU)G(PSU)CAGGUG GGGAGUUUGG CUG(OMG)GGCGGC A CAUCUGU(UR3) AAACC(A2M)UAAC GCAGGUG(PSU)CC UAAGGGGGGC UCAUGGAGAA CAGAAAUCUC CAGUAGAACA AAAGGGUAA AAGUCCCCUU GA(PSU)UUUGAUU UUCAG(OMU)G(UY1)GA AUACAAACCA (PSU)GAAAGUGUG GCCUA UCGA UCCUUUAGUC CCUCGAAAUU UGAGGCUA(OMG)A (OMG)GUGCCAGAA AAGUUACCAC AG(OMG)GAUAACU GGC (PSU)UGUGG CGGCCAAGCG (PSU)(UR3)CAUAGCGA CGUCGCUUUU UGA(PSU)CCUU(5MC)G AUGUCGG(OMC) (PSU) CUUCCUAUCA UACCGAAGCA GAA(PSU)UCGGUA AGCGU(PSU)(OMG)GAU (OMU)(OMG)(PSU)UCACCCA C (PSU)AAUAGGG AACG(PSU)G(A2M)G(OMC)U GGGUUUAGA(OMC) CGUCGUGAGA CAGGU(PSU)AGUU UUACCCUA C UGAUGAACUC GUCGCAAUGG UAAUUCAGCU UAGUACGAGA GGAACCGCUG AUUCAGAUAA UUGGUUUUUG CGGUUGUCC GACCGGGCAG UGCCGCGAAG CUACCAUCUG CUGGAUAAUG GCUGAACGCC UCUAAGUCAG AAUCCAUGCC AGAACGCGAC GAUACUACC CGCACGUUGU AGACGUAUAA GAAUAGGCUC CGGCCUCGUA UCCUAGCAGG CGAUUCCUCC GCCGGCCUCG A AGUGGCCG UCGGUAAUUC GCGUAUUGCA AUUUAGACAC GCGCGGGAUC AAAUCCUUUG CAGACGACUU AGAUGUGCGA AA GGGUCCU GUAAGCAGUA GAGUAGCCUU GUUGUUACGA UCUGCUGAGG GUAAGCCCUC CUUCGCCUAG AUUU

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Macromolecule #2: 5S RNA

MacromoleculeName: 5S RNA / type: rna / ID: 2 / Number of copies: 1
Source (natural)Organism: Thermochaetoides thermophila DSM 1495 (fungus)
Molecular weightTheoretical: 38.612891 KDa
SequenceString:
ACAUACGACC AUACCUAGUG GAAAACUCGG GAUCCCGUCC GCUCUCCCAU AGAUAGGCCA CUAAGGGCGG GGUUAGUACU CAGGUCGGU GACGACUGGG GAAUCCCCCG UGUUGUAUGU U

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Macromolecule #3: 5.8S RNA

MacromoleculeName: 5.8S RNA / type: rna / ID: 3 / Number of copies: 1
Source (natural)Organism: Thermochaetoides thermophila DSM 1495 (fungus)
Molecular weightTheoretical: 50.161715 KDa
SequenceString:
AAACUUUCAA CAACGGA(PSU)CU CUUGGUUCUG GCAUCGAUGA AGAACGCAGC GAAA(PSU)GCGAU AAGUAAUGUG AA (PSU)U(OMG)CAGA AUUCCGUGAA UCAUCGAAUC UUUGAACGCA CAUUGCGCCC GCCGGUAUUC CGGCGGGCAU GCCUG UUCG AGCGUCAU

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Macromolecule #4: E-site tRNA (5'-R(P*CP*CP*A)-3')

MacromoleculeName: E-site tRNA (5'-R(P*CP*CP*A)-3') / type: rna / ID: 4 / Number of copies: 1
Source (natural)Organism: Thermochaetoides thermophila DSM 1495 (fungus)
Molecular weightTheoretical: 894.612 Da
SequenceString:
CCA

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Macromolecule #5: 60S ribosomal protein L2-like protein

MacromoleculeName: 60S ribosomal protein L2-like protein / type: protein_or_peptide / ID: 5 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermochaetoides thermophila DSM 1495 (fungus)
Molecular weightTheoretical: 27.598875 KDa
SequenceString: MGRVIRNQRK GRGSVFTAHT RLRKAPAKFR PLDYAERHGY IRGIVKEIIH DPGRGAPLAR VVFRSPYKYK QITETFIANE GMYTGQFIY AGKNAALTVG NILPLSSVPE GTVVSNVEEK PGDRGALGRT SGNYVTVVGH NPDEGKTRIK LPSGAKKVVP S SSRGMIGI ...String:
MGRVIRNQRK GRGSVFTAHT RLRKAPAKFR PLDYAERHGY IRGIVKEIIH DPGRGAPLAR VVFRSPYKYK QITETFIANE GMYTGQFIY AGKNAALTVG NILPLSSVPE GTVVSNVEEK PGDRGALGRT SGNYVTVVGH NPDEGKTRIK LPSGAKKVVP S SSRGMIGI VAGGGRTDKP LLKASRAKHK FAVKRNRWPK TRGVAMNPVD HPHGGGNHQH IGKASTISRY AAQGQKAGLI AA RRTGLLR GTQKTKE

UniProtKB: 60S ribosomal protein L2-like protein

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Macromolecule #6: 60S ribosomal protein L3-like protein

MacromoleculeName: 60S ribosomal protein L3-like protein / type: protein_or_peptide / ID: 6 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermochaetoides thermophila DSM 1495 (fungus)
Molecular weightTheoretical: 44.456855 KDa
SequenceString: MSHRKYEAPR HGSLAFLPRK RAARHRGRVK SFPKDDPKKP VHLTAAMGYK AGMTTIVRDL DRPGAKAHKK EVVEAVTIID CPPMVVVGL VGYIETPRGL RSLTTVWAEH LSDEVKRRFY KNWYKSKKKA FTKYAKKYAE NNGASITREL ERIKKYCTVV R VLAHTQIR ...String:
MSHRKYEAPR HGSLAFLPRK RAARHRGRVK SFPKDDPKKP VHLTAAMGYK AGMTTIVRDL DRPGAKAHKK EVVEAVTIID CPPMVVVGL VGYIETPRGL RSLTTVWAEH LSDEVKRRFY KNWYKSKKKA FTKYAKKYAE NNGASITREL ERIKKYCTVV R VLAHTQIR KTPLKQKKAH LMEIQINGGS VADKVEFGRS LFEKPVTIDT IFEKDEMIDV IAVTKGHGFV GVTARWGTKK LP RKTHKGL RKVACIGAWH PSHVQWTVAR AGQMGYHHRT SVNHKIYRIG KGDDEANAST ETDLTKKKIT PMGGFVRYGE VNN DYVMIK GSVPGVKKRI MTLRKSLFTH TSRKALEKVE LKWIDTSSEF GHGAFQTAAE KKQFMGTLKK DLQTSA

UniProtKB: Large ribosomal subunit protein uL3

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Macromolecule #7: 60S ribosomal protein L4-like protein

MacromoleculeName: 60S ribosomal protein L4-like protein / type: protein_or_peptide / ID: 7 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermochaetoides thermophila DSM 1495 (fungus)
Molecular weightTheoretical: 39.439938 KDa
SequenceString: MASRPTVTVF GADGKPTGAT EVLPKVFSAP IRPDIVKHVH TGMAKNKRQP YAVSEKAGHQ TSAESWGTGR AVARIPRVSG GGTHRAGQG AFGNMCRSGR MFAPTKIWRK WHVKINQGQK RFATASALAA SAVAPLLMAR GHQVSTVPEV PLVVDSAAVA G DAVAKTAA ...String:
MASRPTVTVF GADGKPTGAT EVLPKVFSAP IRPDIVKHVH TGMAKNKRQP YAVSEKAGHQ TSAESWGTGR AVARIPRVSG GGTHRAGQG AFGNMCRSGR MFAPTKIWRK WHVKINQGQK RFATASALAA SAVAPLLMAR GHQVSTVPEV PLVVDSAAVA G DAVAKTAA AYKLLKAIGA GPDVEKVKKS KKLRAGKGKM RGRRHRQRRG PLIVYSPEHD GKELVKGFRN IPGVETCPVD AL NLLQLAP GGHLGRFIVW TSAAIKQLDA VYESKKGFFL PANIVSQADL SRLINSTEIQ SVLRAPKGEA RTKRACVQKK NPL RNKQIM LRLNPYASTF AKEKLGEVKA EEGKPPKVPA SFKELLHEA

UniProtKB: 60S ribosomal protein L4-like protein

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Macromolecule #8: 60S ribosomal protein l5-like protein

MacromoleculeName: 60S ribosomal protein l5-like protein / type: protein_or_peptide / ID: 8 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermochaetoides thermophila DSM 1495 (fungus)
Molecular weightTheoretical: 35.034605 KDa
SequenceString: MAFHKLVKNS AYYSRFQTKF KRRRQGKTDY YARKRLITQA KNKYNAPKYR LVVRFTNRDI ITQMVTSEIN GDKIFAAAYS HELRAYGIN HGLTNWAAAY ATGLLLARRV LAKLGLDKTF TGVEEPNGEY TLTEAAETED GERRPFKAIL DVGLARTSTG A RVFGVMKG ...String:
MAFHKLVKNS AYYSRFQTKF KRRRQGKTDY YARKRLITQA KNKYNAPKYR LVVRFTNRDI ITQMVTSEIN GDKIFAAAYS HELRAYGIN HGLTNWAAAY ATGLLLARRV LAKLGLDKTF TGVEEPNGEY TLTEAAETED GERRPFKAIL DVGLARTSTG A RVFGVMKG ASDGGIFIPH SENRFPGYDI ETEELDTEVL KKYIYGGHVA EYMETLADDD EERYKSQFVK YIEDDVEADS LE ELYAEAH KQIRADPFRK YVSDAPKKSK EEWKAESLKY KKAKLSREER KARVEAKIKQ LLAEQDE

UniProtKB: Large ribosomal subunit protein uL18

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Macromolecule #9: 60S ribosomal protein L6

MacromoleculeName: 60S ribosomal protein L6 / type: protein_or_peptide / ID: 9 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermochaetoides thermophila DSM 1495 (fungus)
Molecular weightTheoretical: 22.132994 KDa
SequenceString: MSAAPTTKTF GKGTRTVPAP SEKAQKWYPA EDEAQPKKVR KAVRPWTPRK SLQPGTVLIL LAGRFRGKRV VLLKCLDQGV LLVTGPFKI NGVPLRRVNA RYVIATSVKV DLTGVDQAKI DEVAQPKYFT AEKAKEKASE EAFFKQGEKP QKKPVSSTRA A DQKAIDKA ...String:
MSAAPTTKTF GKGTRTVPAP SEKAQKWYPA EDEAQPKKVR KAVRPWTPRK SLQPGTVLIL LAGRFRGKRV VLLKCLDQGV LLVTGPFKI NGVPLRRVNA RYVIATSVKV DLTGVDQAKI DEVAQPKYFT AEKAKEKASE EAFFKQGEKP QKKPVSSTRA A DQKAIDKA LIANIKKVDM LASYLASSFS LRKGDKPHLM KF

UniProtKB: 60S ribosomal protein L6

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Macromolecule #10: 60S ribosomal protein l7-like protein

MacromoleculeName: 60S ribosomal protein l7-like protein / type: protein_or_peptide / ID: 10 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermochaetoides thermophila DSM 1495 (fungus)
Molecular weightTheoretical: 28.821816 KDa
SequenceString: MSSTTVPTQN DILVPETLLK KRKSQEKARA ERAAALEKRK QANKEKRQVI FKRAEKYVKE YREQEREKIR LARIAKQQGS FHIPAEAKL VFVIRIKGIN KIPPKPRKIL QLLRLRQINN GVFVKVTKAT AEMIKIVEPW VAYGYPNLKS VRELIYKRGY G KVNGQRIP ...String:
MSSTTVPTQN DILVPETLLK KRKSQEKARA ERAAALEKRK QANKEKRQVI FKRAEKYVKE YREQEREKIR LARIAKQQGS FHIPAEAKL VFVIRIKGIN KIPPKPRKIL QLLRLRQINN GVFVKVTKAT AEMIKIVEPW VAYGYPNLKS VRELIYKRGY G KVNGQRIP LTDNAIIEEN LGKYGIICIE DLIHEIFTVG PNFKQAANFL WPFKLSNPNG GFRPRKFKHF IEGGDLGNRE EH INALIRA MN

UniProtKB: 60S ribosomal protein l7-like protein

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Macromolecule #11: 60S ribosomal protein L8

MacromoleculeName: 60S ribosomal protein L8 / type: protein_or_peptide / ID: 11 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermochaetoides thermophila DSM 1495 (fungus)
Molecular weightTheoretical: 29.74449 KDa
SequenceString: MPPKSGKKVA PAPFPQGKAG AKKAPKNPLL EKRPRNFGIG QDIQPKRNLS RMVKWPEYIR LQRQKKILRM RLKVPPAIAQ FQYTLDKNL AAQAFKLLNK YRPETKQEKK ERLLREATAI KEGKKKEDVS KKPYTVKYGL NHVVGLIENK KASLVLIAND V DPIELVVF ...String:
MPPKSGKKVA PAPFPQGKAG AKKAPKNPLL EKRPRNFGIG QDIQPKRNLS RMVKWPEYIR LQRQKKILRM RLKVPPAIAQ FQYTLDKNL AAQAFKLLNK YRPETKQEKK ERLLREATAI KEGKKKEDVS KKPYTVKYGL NHVVGLIENK KASLVLIAND V DPIELVVF LPALCRKMGI PYAIIKGKAR LGTLVHKKTA AVVAITEVRS EDKNELAKLI SAVKEGYLEK VEDTRKRWGG GI MGFKAQK REEKRKKSLE TAIKV

UniProtKB: 60S ribosomal protein L8

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Macromolecule #12: 60S ribosomal protein l9-like protein

MacromoleculeName: 60S ribosomal protein l9-like protein / type: protein_or_peptide / ID: 12 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermochaetoides thermophila DSM 1495 (fungus)
Molecular weightTheoretical: 21.582133 KDa
SequenceString: MRYIHSEETI PVPENLKVSI KSRLVTVEGP RGKLQKDLSH IAVNFSVVKK GVIGLEIHHG SRKDVAALRT VRTIINNMII GVTKGFKYK MRYVYAHFPI NVNVEKNAET GCYEVEIRNF IGEKIVRKVV MAPGVEVEIS KAQKDELILS GNSLEAVSQS A ADIQQICK ...String:
MRYIHSEETI PVPENLKVSI KSRLVTVEGP RGKLQKDLSH IAVNFSVVKK GVIGLEIHHG SRKDVAALRT VRTIINNMII GVTKGFKYK MRYVYAHFPI NVNVEKNAET GCYEVEIRNF IGEKIVRKVV MAPGVEVEIS KAQKDELILS GNSLEAVSQS A ADIQQICK VRNKDIRKFL DGIYVSEKGN IVED

UniProtKB: 60S ribosomal protein l9-like protein

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Macromolecule #13: 60S ribosomal protein L10-like protein

MacromoleculeName: 60S ribosomal protein L10-like protein / type: protein_or_peptide / ID: 13 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermochaetoides thermophila DSM 1495 (fungus)
Molecular weightTheoretical: 25.255373 KDa
SequenceString: MARRPARCYR YCKNKPYPKS RFNRGVPDPK IKIYDLGRKR ATVDDFPLCV HLVSNEYEQL SSEALEAARI CANKYLVKYA GKEGFHLRV RAHPYHVIRI NKMLSCAGAD RLQTGMRGAF GKPQGTVARV DIGQILISVR TRDSNRAIAL EALRRCQYKF P GRQKIIVS ...String:
MARRPARCYR YCKNKPYPKS RFNRGVPDPK IKIYDLGRKR ATVDDFPLCV HLVSNEYEQL SSEALEAARI CANKYLVKYA GKEGFHLRV RAHPYHVIRI NKMLSCAGAD RLQTGMRGAF GKPQGTVARV DIGQILISVR TRDSNRAIAL EALRRCQYKF P GRQKIIVS KNWGFTPLRR EEYLEKKAAG RVRVDGAYVQ FLTNHGNLEE NMRRFPDAFK A

UniProtKB: 60S ribosomal protein L10-like protein

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Macromolecule #14: Putative ribosomal protein

MacromoleculeName: Putative ribosomal protein / type: protein_or_peptide / ID: 14 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermochaetoides thermophila DSM 1495 (fungus)
Molecular weightTheoretical: 20.119275 KDa
SequenceString:
MSSEKAQNPM RELRIQKLVL NISVGESGDR LTRAAKVLEQ LSGQTPVYSK ARYTVRQFGI RRNEKIAVHV TVRGPKAEEI LERGLKVKE YELRRRNFSE TGNFGFGISE HIDLGIKYDP SIGIYGMDFY CCMTRPGERV AKRRRCKSRI GASHRITREE T IRWFKQRF DGIVR

UniProtKB: Large ribosomal subunit protein uL5

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Macromolecule #15: 60S ribosomal protein L12-like protein

MacromoleculeName: 60S ribosomal protein L12-like protein / type: protein_or_peptide / ID: 15 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermochaetoides thermophila DSM 1495 (fungus)
Molecular weightTheoretical: 17.802676 KDa
SequenceString:
MPPKFDPNEI KIIHLRATGG EVGASSALAP KIGPLGLSPK KVGEDIAKAT ADWKGLRVTV RLTIQNRQAQ VSVVPTASAL IIRALKEPP RDRKKEKNIK HNKSVSLDEI IEIARTMRFK SFSKDLKGGV KEILGTAFSV GCQVDGKSPK AISDAIEAGE I DIPDE

UniProtKB: 60S ribosomal protein L12-like protein

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Macromolecule #16: 60S ribosomal protein L13

MacromoleculeName: 60S ribosomal protein L13 / type: protein_or_peptide / ID: 16 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermochaetoides thermophila DSM 1495 (fungus)
Molecular weightTheoretical: 24.19118 KDa
SequenceString: MAIKHNQQIP NNHFRKHWQR RVRCHFDQPG KKVTRRLARR AKAAALAPRP VDKLRPIVRC PTVKYNRRTR LGRGFTLEEL KAAGIPRLL APTIGIAVDH RRKNLSEESL AANVQRLKDY KARLILFPRK SNKPKKADTP KDQQTAETTT SLRTSFGVEQ P LAPGFTEI ...String:
MAIKHNQQIP NNHFRKHWQR RVRCHFDQPG KKVTRRLARR AKAAALAPRP VDKLRPIVRC PTVKYNRRTR LGRGFTLEEL KAAGIPRLL APTIGIAVDH RRKNLSEESL AANVQRLKDY KARLILFPRK SNKPKKADTP KDQQTAETTT SLRTSFGVEQ P LAPGFTEI SKSEIPAGIE GGAYRALRKA RSDARLVGVR EKRAKEKAEA EANKK

UniProtKB: 60S ribosomal protein L13

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Macromolecule #17: 60S ribosomal protein L14-like protein

MacromoleculeName: 60S ribosomal protein L14-like protein / type: protein_or_peptide / ID: 17 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermochaetoides thermophila DSM 1495 (fungus)
Molecular weightTheoretical: 16.111901 KDa
SequenceString:
MAEINVEATS WRRVEVGRVL KLENGSLAAI VEIIDHKRVL ADGPSSDPKL ATPRGIVPLS RALLTPIVIP KLPRGARTGA VKKAWEAYG VDAKWKETNW AKKQLQQERR QSLTDFDRFK VMRLKKQRRF EERKALAKIK AAA

UniProtKB: 60S ribosomal protein L14-like protein

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Macromolecule #18: Ribosomal protein L15

MacromoleculeName: Ribosomal protein L15 / type: protein_or_peptide / ID: 18 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermochaetoides thermophila DSM 1495 (fungus)
Molecular weightTheoretical: 24.307287 KDa
SequenceString: MGALKYLEEL SKKKQSDVVR FLLRVRCWEY RQLNVIHRAS RPSRPDKARR LGYKAKQGYV IYRVRVRRGG RKRPVPKGAT YGKPTNQGV NQLKYQRSLR ATAEERVGRR CSNLRVLNSY WVNQDSTYKY YEVILVDPNH KAIRRDPRIN WICNPVHKHR E CRGLTSTG ...String:
MGALKYLEEL SKKKQSDVVR FLLRVRCWEY RQLNVIHRAS RPSRPDKARR LGYKAKQGYV IYRVRVRRGG RKRPVPKGAT YGKPTNQGV NQLKYQRSLR ATAEERVGRR CSNLRVLNSY WVNQDSTYKY YEVILVDPNH KAIRRDPRIN WICNPVHKHR E CRGLTSTG KKSRGLNKGH RFNKTRAGRR KTWKRHNTLS LWRYR

UniProtKB: Ribosomal protein L15

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Macromolecule #19: 60S ribosomal protein L16-like protein

MacromoleculeName: 60S ribosomal protein L16-like protein / type: protein_or_peptide / ID: 19 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermochaetoides thermophila DSM 1495 (fungus)
Molecular weightTheoretical: 22.888037 KDa
SequenceString: (ACE)SSFESVVVI DGKGHLLGRL ASIVAKQLLS GQKIVVVRCE ALNISGEFFR AKLKYHAYLR KMTRYNPTRG GPFHFR APS RIFYKAVRGM IPHKTARGAA ALERLKVFEG VPPPYDKKKK MVVPQALRVL RLQPGRKYCT VGRLSHEVGW KYQDVVA RL EERRKAKGAA ...String:
(ACE)SSFESVVVI DGKGHLLGRL ASIVAKQLLS GQKIVVVRCE ALNISGEFFR AKLKYHAYLR KMTRYNPTRG GPFHFR APS RIFYKAVRGM IPHKTARGAA ALERLKVFEG VPPPYDKKKK MVVPQALRVL RLQPGRKYCT VGRLSHEVGW KYQDVVA RL EERRKAKGAA YYERKKLAAR QLSEAKKAAA AKVDPKVSEA LAAYGY

UniProtKB: 60S ribosomal protein L16-like protein

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Macromolecule #20: 60S ribosomal protein l17-like protein

MacromoleculeName: 60S ribosomal protein l17-like protein / type: protein_or_peptide / ID: 20 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermochaetoides thermophila DSM 1495 (fungus)
Molecular weightTheoretical: 21.072207 KDa
SequenceString:
MVRYAATEIA PTKSARARGS YLRVSFKNTR ETAQAINGWK LQRALTFLQN VIDKKEAVPM RRYAGSTGRT AQGKQWGVSR ARWPVKSAQ FLIGLLKNAE ANADAKGLDT GNLIIKHIQV NQAPKQRRRT YRAHGRINPY MSNPCHIELI LTEAEETVQK S EAVVRDVE SHLSSRQRGV RIRRALTAA

UniProtKB: Large ribosomal subunit protein uL22

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Macromolecule #21: Ribosomal protein L18-like protein

MacromoleculeName: Ribosomal protein L18-like protein / type: protein_or_peptide / ID: 21 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermochaetoides thermophila DSM 1495 (fungus)
Molecular weightTheoretical: 24.195535 KDa
SequenceString: MDLVCAFIGP LFAPGARRLN LEEIAAESSS GIDLRWKHVR SSHRKAPKSD NVYLKLLVKL YRFLARRTEA PFNKVVLRRL FMSRINRPP VSLSRIARNL KNGNEKKTVV VVATVTDDNR LLQVPKMEVA ALRFTAKARA RIEAAGGRTL TLDQLALEKP T GANTLLLR ...String:
MDLVCAFIGP LFAPGARRLN LEEIAAESSS GIDLRWKHVR SSHRKAPKSD NVYLKLLVKL YRFLARRTEA PFNKVVLRRL FMSRINRPP VSLSRIARNL KNGNEKKTVV VVATVTDDNR LLQVPKMEVA ALRFTAKARA RIEAAGGRTL TLDQLALEKP T GANTLLLR GPKNAREAVK HFGFGPHKHK KPYVRSKGRK FERARGRRRS RGFKV

UniProtKB: Ribosomal protein L18-like protein

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Macromolecule #22: Ribosomal protein L19

MacromoleculeName: Ribosomal protein L19 / type: protein_or_peptide / ID: 22 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermochaetoides thermophila DSM 1495 (fungus)
Molecular weightTheoretical: 22.409201 KDa
SequenceString: MVNLRTQKRL AASVLGCGEG KVWLDPNEVS EISNANSRQS IRKLVADGLI IKKPVTMHSR SRARELNLAR RIGRHRGFGK RKGTADARM PQQVLWMRRQ RVLRRLLVKY RASGKIDKHL YHELYHLAKG NTFKHKRALV EHIHRAKAEK ARERQIKEEM D AKRARTKA ...String:
MVNLRTQKRL AASVLGCGEG KVWLDPNEVS EISNANSRQS IRKLVADGLI IKKPVTMHSR SRARELNLAR RIGRHRGFGK RKGTADARM PQQVLWMRRQ RVLRRLLVKY RASGKIDKHL YHELYHLAKG NTFKHKRALV EHIHRAKAEK ARERQIKEEM D AKRARTKA ARERKQERQA AKRNALLGEE EESK

UniProtKB: Ribosomal protein L19

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Macromolecule #23: 60S ribosomal protein L20

MacromoleculeName: 60S ribosomal protein L20 / type: protein_or_peptide / ID: 23 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermochaetoides thermophila DSM 1495 (fungus)
Molecular weightTheoretical: 20.341893 KDa
SequenceString:
MGRLQEYQVI GRHLPTEANP NPALYRMRIF APNEVVAKSR FWYFLRGLKK VKKATGEIVS VNVISEKHPL KVKNFGIWLR YDSRSGTHN MYKEYRETSR VAAVEAMYAD MAARHRARFR SIHILKVVEL EKTEDVKRPY IKQLVAKNLS FPLPHRVPKI S TKKIFSAK RPSTFS

UniProtKB: 60S ribosomal protein L20

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Macromolecule #24: 60S ribosomal protein l21-like protein

MacromoleculeName: 60S ribosomal protein l21-like protein / type: protein_or_peptide / ID: 24 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermochaetoides thermophila DSM 1495 (fungus)
Molecular weightTheoretical: 18.159227 KDa
SequenceString:
MGHAAGLRSG TRYAFSRGFR KHGQIPLSTY LRTYRVGDIV DIKVNGAVQK GMPHKFYHGK TGVVYNVTKS AVGVIVYKRV KHRYIEKRI NVRIEHVKPS RSREDFLRRV KENAELKKKA KAEGVPVQLK RQPAMPREAH TVSIADNKPV TLAPVAYETT I

UniProtKB: 60S ribosomal protein l21-like protein

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Macromolecule #25: 60S ribosomal protein L22-like protein

MacromoleculeName: 60S ribosomal protein L22-like protein / type: protein_or_peptide / ID: 25 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermochaetoides thermophila DSM 1495 (fungus)
Molecular weightTheoretical: 14.302563 KDa
SequenceString:
MAPVAKKSGA KGKGPKVTKK FIINASQPAS DKIFDVSAFE KFLNERIKVD GRVGNLGDVI KISQIGDGKV EIIAHNDLSG RYLKYLTKK FLKKMQLRDW LRVVATSKGV YELKFYNIVN DEAEEEED

UniProtKB: 60S ribosomal protein L22-like protein

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Macromolecule #26: 60S ribosomal protein l23-like protein

MacromoleculeName: 60S ribosomal protein l23-like protein / type: protein_or_peptide / ID: 26 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermochaetoides thermophila DSM 1495 (fungus)
Molecular weightTheoretical: 14.674428 KDa
SequenceString:
MAKQKRGAPG GKLKMTLGLP VGAIMNCADN SGARNLYIIA VKGAGARLNR LPAGGVGDMV MATVKKGKPE LRKKVHPAVI VRQAKPWKR FDGVFLYFED NAGVIVNPKG EMKGSAITGP VGKEAAELWP RIASNAGVVM

UniProtKB: 60S ribosomal protein l23-like protein

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Macromolecule #27: 60S ribosomal protein L24-like protein

MacromoleculeName: 60S ribosomal protein L24-like protein / type: protein_or_peptide / ID: 27 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermochaetoides thermophila DSM 1495 (fungus)
Molecular weightTheoretical: 18.081076 KDa
SequenceString:
MRTYEDTFSG QRIYPGKGKL YVRGDSKIFR FQNGKSESLF LQRKNPRRIA WTVLYRRQHR KGISEEVAKK RTRRTIKSQR AIVGASLEV IKERRSMRPE ARNAARLAAI KESKEKKAAA QAAKKAEKAK NAAAAAKGQP QGRVTSKQGA KGAPVKVAAK S R

UniProtKB: 60S ribosomal protein L24-like protein

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Macromolecule #28: 60S ribosomal protein L25-like protein

MacromoleculeName: 60S ribosomal protein L25-like protein / type: protein_or_peptide / ID: 28 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermochaetoides thermophila DSM 1495 (fungus)
Molecular weightTheoretical: 17.175334 KDa
SequenceString:
MAPKDVKKGG ASKAAKGAQA KKAAQAALKG VHSHKKTKVR KSTTFHRPKT LVLSRAPKYP RKSIPHEPRL DEHKIIIHPL NTEGALKKI EEQNTLVFIV DVKANKAQIK QALKKLYDID TVKINTLIRP DGTKKAFARL TPDVDALDIA ATKLGLV

UniProtKB: 60S ribosomal protein L25-like protein

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Macromolecule #29: 60S ribosomal protein L26-like protein

MacromoleculeName: 60S ribosomal protein L26-like protein / type: protein_or_peptide / ID: 29 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermochaetoides thermophila DSM 1495 (fungus)
Molecular weightTheoretical: 15.565322 KDa
SequenceString:
MKVRPTVSSS RRKARKAHFS APSSVRRVIM SAPLSKELRE KYNVRSIPIR KGDEVQIVRG AHKDKEGKVT SVYRLKYVIH VERVTREKA TGQTVPIGIH PSNVVITKLH LDKDRENILA RIKAGREQVA KAKGKKTAA

UniProtKB: 60S ribosomal protein L26-like protein

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Macromolecule #30: 60S ribosomal protein L27

MacromoleculeName: 60S ribosomal protein L27 / type: protein_or_peptide / ID: 30 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermochaetoides thermophila DSM 1495 (fungus)
Molecular weightTheoretical: 15.803652 KDa
SequenceString:
MKFLKTSRVC LVTRGRYAGK KVVIIQPVDQ GTKSHPYGHA LVAGIERYPS KITRRMSKAR IEKRSKIKPF IKVINYNHLM PTRYTLELE GLKAVINADT FKEPSQREEA KKTVKKVLED RYNSGKNRWF FTPLRF

UniProtKB: 60S ribosomal protein L27

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Macromolecule #31: 60S ribosomal protein L28-like protein

MacromoleculeName: 60S ribosomal protein L28-like protein / type: protein_or_peptide / ID: 31 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermochaetoides thermophila DSM 1495 (fungus)
Molecular weightTheoretical: 16.848539 KDa
SequenceString:
MPTRFSKTRK HRGHVSAGKG RVGKHRKHPG GRGMAGGQHH HRTNLDKYHP GYFGKVGMRH FHLLRNHYWR PSINIDKLWS LVPSDVREQ YLSGQKKDTA PVIDLLSHGY AKLLGKGRLP EIPVVVRARY VSAEAERKVK EAGGVVELVA

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Macromolecule #32: 60S ribosomal protein L29

MacromoleculeName: 60S ribosomal protein L29 / type: protein_or_peptide / ID: 32 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermochaetoides thermophila DSM 1495 (fungus)
Molecular weightTheoretical: 15.041307 KDa
SequenceString:
MAKSKNSSQH NQSRKAHRNG IKKPKTQRYP SLKGTDPKFR RNHRHALHGT AKALKEFKEG KRETAMAKSK NSSQHNQSRK AHRNGIKKP KTQRYPSLKG TDPKFRRNHR HALHGTAKAL KEFKEGKRET A

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Macromolecule #33: 60S ribosomal protein l30-like protein

MacromoleculeName: 60S ribosomal protein l30-like protein / type: protein_or_peptide / ID: 33 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermochaetoides thermophila DSM 1495 (fungus)
Molecular weightTheoretical: 11.602616 KDa
SequenceString:
MAPKKSKSEA QSIGAKLALV IKSGKVVLGY RSTLKALRSG KAKLILIAAN TPPLRKSELE YYSMMSKTPV HHYSGTNIEL GTACGKLFR CSTMAILDAG DSDILADQQ

UniProtKB: 60S ribosomal protein l30-like protein

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Macromolecule #34: Putative 60S ribosomal protein

MacromoleculeName: Putative 60S ribosomal protein / type: protein_or_peptide / ID: 34 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermochaetoides thermophila DSM 1495 (fungus)
Molecular weightTheoretical: 13.872177 KDa
SequenceString:
MSSTQKKQRS AIADVVAREY TIHLHKRLHG VTFKKRAPRA IKEIKKFAQK AMGTSDVRLD PQLNKKVWEQ GIKGVPFRIR VRISRRRND EEGAKEKLYS YVQAVNVKNP KGLLTSVVEE E

UniProtKB: Putative 60S ribosomal protein

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Macromolecule #35: 60S ribosomal protein L32-like protein

MacromoleculeName: 60S ribosomal protein L32-like protein / type: protein_or_peptide / ID: 35 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermochaetoides thermophila DSM 1495 (fungus)
Molecular weightTheoretical: 15.095985 KDa
SequenceString:
MVAAKKHVPI VKKRTKRFMR HQSDRFKCLD SAWRKPKGID NRVRRRFKGN LAMPSIGYGS NKKTKHMMPS GHKAFLVHNV KDVELLLMH NRTYAAEIAH NVSSRKRIDI ITRAKQLGVK VTNAKAKVTT EV

UniProtKB: 60S ribosomal protein L32-like protein

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Macromolecule #36: 60S ribosomal protein l33-like protein

MacromoleculeName: 60S ribosomal protein l33-like protein / type: protein_or_peptide / ID: 36 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermochaetoides thermophila DSM 1495 (fungus)
Molecular weightTheoretical: 12.330337 KDa
SequenceString:
MPSEAGHRLY VKGRHLSYQR GRRNTHPKTS LIKIEGVDDT AAANFYLGKR VAYVYRAQKE VRGTKIRVIW GKITRPHGNS GVVRAKFTH PLPARSFGAS VRIMLYPSSI

UniProtKB: 60S ribosomal protein l33-like protein

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Macromolecule #37: Ribosomal protein l34-like protein

MacromoleculeName: Ribosomal protein l34-like protein / type: protein_or_peptide / ID: 37 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermochaetoides thermophila DSM 1495 (fungus)
Molecular weightTheoretical: 13.492993 KDa
SequenceString:
MAPTRVTYRR RNPYNTTSNR TRVIKTPGGQ LRVLHIKKRG TAPKCGDCGI KLPGIPALRP REYATISKPK KTVQRAYGGS RCGNCVRDR IIRAFLIEEQ KIVKKVLKEQ SQAEKKASKK

UniProtKB: Ribosomal protein l34-like protein

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Macromolecule #38: Dolichyl-diphosphooligosaccharide--protein glycotransferase

MacromoleculeName: Dolichyl-diphosphooligosaccharide--protein glycotransferase
type: protein_or_peptide / ID: 38 / Number of copies: 1 / Enantiomer: LEVO
EC number: dolichyl-diphosphooligosaccharide-protein glycotransferase
Source (natural)Organism: Thermochaetoides thermophila DSM 1495 (fungus)
Molecular weightTheoretical: 14.643441 KDa
SequenceString:
MSSNGKVKAG QLWSKNKEEL TKILGELKTE LSQLRIQKIS SSGAKLNKIH DLRKSIARVL TVINAKQRAQ LRLFYKNKKY LPLDLRPKL TRALRRRLSK EDASRVLEKT KKRLTHFPQR KYAVKAA

UniProtKB: Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3

+
Macromolecule #39: 60S ribosomal protein L36

MacromoleculeName: 60S ribosomal protein L36 / type: protein_or_peptide / ID: 39 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermochaetoides thermophila DSM 1495 (fungus)
Molecular weightTheoretical: 12.784053 KDa
SequenceString:
MSEDATPKAP VERTGLIRGL NKGHKTTRRV LKERPSRRKG AQSKRTQFVR SLIREVAGLA PYERRVIELL RNGKDKRARK FSKKKLGTF GRAKRKCEEL QRIIAESRRA H

UniProtKB: 60S ribosomal protein L36

+
Macromolecule #40: Ribosomal protein L37

MacromoleculeName: Ribosomal protein L37 / type: protein_or_peptide / ID: 40 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermochaetoides thermophila DSM 1495 (fungus)
Molecular weightTheoretical: 10.660455 KDa
SequenceString:
MTKGTSSFGK RHNKTHGLCR RCGRRSLHNQ KKVCASCGYP AAKTRKYNWS EKAKRRKVTG TGRMRYLSTV PRRFKNGFRT GVPKGARGP AVSTSS

UniProtKB: Ribosomal protein L37

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Macromolecule #41: 60S ribosomal protein L38-like protein

MacromoleculeName: 60S ribosomal protein L38-like protein / type: protein_or_peptide / ID: 41 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermochaetoides thermophila DSM 1495 (fungus)
Molecular weightTheoretical: 9.537339 KDa
SequenceString:
MPQEVSDIKK FIEICRRKDA SSARIKKNPK TQQIKFKVRC QRFLYTLVLK DSDKAEKLKQ SLPPNLQIKD VPKRNKRKSS A

UniProtKB: 60S ribosomal protein L38-like protein

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Macromolecule #42: Ribosomal protein eL39

MacromoleculeName: Ribosomal protein eL39 / type: protein_or_peptide / ID: 42 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermochaetoides thermophila DSM 1495 (fungus)
Molecular weightTheoretical: 12.577054 KDa
SequenceString:
MPSHKTFRIK QKLAKAQKQN RPIPQWIRLR TGNTIRYNAK RRHWRKTRLG LMPSHKTFRI KQKLAKAQKQ NRPIPQWIRL RTGNTIRYN AKRRHWRKTR LGL

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Macromolecule #43: Putative ribosomal protein

MacromoleculeName: Putative ribosomal protein / type: protein_or_peptide / ID: 43 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermochaetoides thermophila DSM 1495 (fungus)
Molecular weightTheoretical: 14.609222 KDa
SequenceString:
MQIFVKTLTG KTITLEVESS DTIENVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLSDYN IQKESTLHLV LRLRGGIIEP SLKALASKF NCDKMICRKC YARLPPRATN CRKRKCGHSN QLRPKKKLK

UniProtKB: Putative ribosomal protein

+
Macromolecule #44: 60S ribosomal protein L41-A

MacromoleculeName: 60S ribosomal protein L41-A / type: protein_or_peptide / ID: 44 / Number of copies: 2 / Enantiomer: LEVO
Source (natural)Organism: Thermochaetoides thermophila DSM 1495 (fungus)
Molecular weightTheoretical: 3.354243 KDa
SequenceString:
MRAKWRKKRT RRLKRKRRKV RARSK

UniProtKB: Small ribosomal subunit protein eS32A

+
Macromolecule #45: 60S ribosomal protein L44-like protein

MacromoleculeName: 60S ribosomal protein L44-like protein / type: protein_or_peptide / ID: 45 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermochaetoides thermophila DSM 1495 (fungus)
Molecular weightTheoretical: 12.045451 KDa
SequenceString:
MVNVPKTRKT FCKGKDCQKH TLHKVTQYKA GKASAFAQGK RRYDRKQSGY GGQTKPVFHK KAKTTKKIVL RLECSVCKTK KQLPLKRCK HFELGGDKKT KGAALVF

UniProtKB: 60S ribosomal protein L44-like protein

+
Macromolecule #46: 60S ribosomal protein L43-like protein

MacromoleculeName: 60S ribosomal protein L43-like protein / type: protein_or_peptide / ID: 46 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermochaetoides thermophila DSM 1495 (fungus)
Molecular weightTheoretical: 10.158977 KDa
SequenceString:
MSKRTKKVGI SGKYGTRYGA SLRKLVKKQE VTQHARYTCT FCGKNSVRRT AVGIWSCKSC KKTMAGGAYT VSTPAAAAMR STLRRLREI TEA

UniProtKB: 60S ribosomal protein L43-like protein

+
Macromolecule #47: Putative 60S ribosomal protein

MacromoleculeName: Putative 60S ribosomal protein / type: protein_or_peptide / ID: 47 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermochaetoides thermophila DSM 1495 (fungus)
Molecular weightTheoretical: 15.960451 KDa
SequenceString:
MSNVSADLIW EVSRNYNSFL VKQRTGTFSR DALNLTNQHS RKHAGFVNDK ALGIVPAEKG VKVIAKKVKA ANKPASSLYT VTYKSTARK AYKAIASQAA KHGYRADLRQ AAVARASAIL RSQRPVKPEP PKKLRGAAAR RAAAAGKQ

UniProtKB: Putative 60S ribosomal protein

+
Macromolecule #48: 60S acidic ribosomal protein P0

MacromoleculeName: 60S acidic ribosomal protein P0 / type: protein_or_peptide / ID: 48 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermochaetoides thermophila DSM 1495 (fungus)
Molecular weightTheoretical: 33.85359 KDa
SequenceString: MGGKSGNKAG YFDKLKGLLE EYPSIFVVSV DNVSSQQMHE IRKALRGQGV VLMGKNTMVR RALKTFMPDH PEYERLLPFV KGNVGFVFT NGDLKEVREK ILSNRIKAPA RAGAIAPVDV WVPAGNTGME PGKTSFFQAL GIPTKIARGT IEITTDIKLV E AGAKVGPS ...String:
MGGKSGNKAG YFDKLKGLLE EYPSIFVVSV DNVSSQQMHE IRKALRGQGV VLMGKNTMVR RALKTFMPDH PEYERLLPFV KGNVGFVFT NGDLKEVREK ILSNRIKAPA RAGAIAPVDV WVPAGNTGME PGKTSFFQAL GIPTKIARGT IEITTDIKLV E AGAKVGPS EATLLNMLNI SPFTYGMGIA QVYDQGNTFP ASVLDVSEEQ LLKSFTSAIT TVASLSLALN YPTLPSVIHS LI NSYKKVL AVAVETEYSW PEIEELKDRI ANPEAYAVAA PAAAAAAPVE EKKEEKKEES EKEESDDEGF GGLFD

UniProtKB: 60S acidic ribosomal protein P0

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Macromolecule #49: Nascent chain C-terminus

MacromoleculeName: Nascent chain C-terminus / type: protein_or_peptide / ID: 49 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermochaetoides thermophila DSM 1495 (fungus)
Molecular weightTheoretical: 188.225 Da
SequenceString:
(UNK)(UNK)

+
Macromolecule #50: Nascent chain N-terminus

MacromoleculeName: Nascent chain N-terminus / type: protein_or_peptide / ID: 50 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Thermochaetoides thermophila DSM 1495 (fungus)
Molecular weightTheoretical: 528.644 Da
SequenceString:
(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)

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Macromolecule #51: SPERMIDINE

MacromoleculeName: SPERMIDINE / type: ligand / ID: 51 / Number of copies: 2 / Formula: SPD
Molecular weightTheoretical: 145.246 Da
Chemical component information

ChemComp-SPD:
SPERMIDINE

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Macromolecule #52: SPERMINE

MacromoleculeName: SPERMINE / type: ligand / ID: 52 / Number of copies: 2 / Formula: SPM
Molecular weightTheoretical: 202.34 Da
Chemical component information

ChemComp-SPM:
SPERMINE

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Macromolecule #53: MAGNESIUM ION

MacromoleculeName: MAGNESIUM ION / type: ligand / ID: 53 / Number of copies: 239 / Formula: MG
Molecular weightTheoretical: 24.305 Da

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Macromolecule #54: POTASSIUM ION

MacromoleculeName: POTASSIUM ION / type: ligand / ID: 54 / Number of copies: 188 / Formula: K
Molecular weightTheoretical: 39.098 Da

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Macromolecule #55: ZINC ION

MacromoleculeName: ZINC ION / type: ligand / ID: 55 / Number of copies: 5 / Formula: ZN
Molecular weightTheoretical: 65.409 Da

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Macromolecule #56: water

MacromoleculeName: water / type: ligand / ID: 56 / Number of copies: 2256 / Formula: HOH
Molecular weightTheoretical: 18.015 Da
Chemical component information

ChemComp-HOH:
WATER

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Experimental details

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Structure determination

Methodcryo EM
Processingsingle particle reconstruction
Aggregation stateparticle

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Sample preparation

BufferpH: 7.5
VitrificationCryogen name: ETHANE

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Electron microscopy

MicroscopeTFS KRIOS
Image recordingFilm or detector model: GATAN K3 (6k x 4k) / Average electron dose: 42.7 e/Å2
Electron beamAcceleration voltage: 300 kV / Electron source: FIELD EMISSION GUN
Electron opticsIllumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD / Nominal defocus max: 2.1 µm / Nominal defocus min: 1.1 µm
Experimental equipment
Model: Titan Krios / Image courtesy: FEI Company

+
Image processing

CTF correctionType: PHASE FLIPPING AND AMPLITUDE CORRECTION
Startup modelType of model: PDB ENTRY
PDB model - PDB ID:

7olc

Final reconstructionResolution.type: BY AUTHOR / Resolution: 2.38 Å / Resolution method: FSC 0.143 CUT-OFF / Number images used: 653542
Initial angle assignmentType: ANGULAR RECONSTITUTION
Final angle assignmentType: ANGULAR RECONSTITUTION
FSC plot (resolution estimation)

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