登録情報 データベース : EMDB / ID : EMD-38317 ダウンロードとリンクタイトル Structure of yeast replisome associated with FACT and histone hexamer, Composite map マップデータ 詳細 試料複合体 : Endogenous replisomesタンパク質・ペプチド : x 23種DNA : x 2種リガンド : x 2種 詳細 キーワード Replisome / FACT / histone hexamer / REPLICATION機能・相同性 機能・相同性情報分子機能 ドメイン・相同性 構成要素
Regulation of TP53 Activity through Phosphorylation / : / establishment of sister chromatid cohesion / regulation of sister chromatid cohesion / DNA-templated DNA replication maintenance of fidelity / gene conversion / Unwinding of DNA / maintenance of DNA repeat elements / FACT complex / regulation of nuclear cell cycle DNA replication ... Regulation of TP53 Activity through Phosphorylation / : / establishment of sister chromatid cohesion / regulation of sister chromatid cohesion / DNA-templated DNA replication maintenance of fidelity / gene conversion / Unwinding of DNA / maintenance of DNA repeat elements / FACT complex / regulation of nuclear cell cycle DNA replication / DNA replication initiation / replication fork protection complex / replication fork arrest / Cul8-RING ubiquitin ligase complex / meiotic chromosome segregation / HATs acetylate histones / RNA polymerase I upstream activating factor complex / Condensation of Prophase Chromosomes / epsilon DNA polymerase complex / : / MCM core complex / Assembly of the pre-replicative complex / Switching of origins to a post-replicative state / DNA strand elongation involved in mitotic DNA replication / GINS complex / MCM complex binding / : / mitotic DNA replication preinitiation complex assembly / nuclear DNA replication / : / premeiotic DNA replication / Assembly of the ORC complex at the origin of replication / regulation of chromatin organization / HDACs deacetylate histones / pre-replicative complex assembly involved in nuclear cell cycle DNA replication / anaphase-promoting complex binding / nucleotide-excision repair, DNA gap filling / Activation of the pre-replicative complex / SUMO binding / mitotic DNA replication / DNA replication checkpoint signaling / CMG complex / establishment of mitotic sister chromatid cohesion / nuclear pre-replicative complex / DNA replication proofreading / nucleosome organization / : / DNA replication preinitiation complex / Activation of ATR in response to replication stress / single-stranded DNA 3'-5' DNA exonuclease activity / mitotic DNA replication checkpoint signaling / double-strand break repair via break-induced replication / Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks / MCM complex / Oxidative Stress Induced Senescence / mitotic DNA replication initiation / RMTs methylate histone arginines / cellular response to osmotic stress / mitotic intra-S DNA damage checkpoint signaling / SUMOylation of chromatin organization proteins / silent mating-type cassette heterochromatin formation / single-stranded DNA helicase activity / regulation of DNA-templated DNA replication initiation / mitotic sister chromatid cohesion / 加水分解酵素; エステル加水分解酵素; 5'-リン酸モノエステル産生エンドデオキシリボヌクレアーゼ / TP53 Regulates Transcription of DNA Repair Genes / DNA strand elongation involved in DNA replication / RNA Polymerase II Pre-transcription Events / nuclear chromosome / leading strand elongation / RNA Polymerase I Promoter Escape / mitotic G2 DNA damage checkpoint signaling / positive regulation of transcription by RNA polymerase I / nucleolar large rRNA transcription by RNA polymerase I / Estrogen-dependent gene expression / nuclear replication fork / 3'-5' DNA helicase activity / rRNA transcription / replication fork processing / Dual incision in TC-NER / DNA replication origin binding / positive regulation of RNA polymerase II transcription preinitiation complex assembly / DNA replication initiation / error-prone translesion synthesis / positive regulation of transcription initiation by RNA polymerase II / Ub-specific processing proteases / subtelomeric heterochromatin formation / base-excision repair, gap-filling / nuclear periphery / telomere maintenance / DNA helicase activity / replication fork / helicase activity / meiotic cell cycle / transcription elongation by RNA polymerase II / base-excision repair / DNA-templated DNA replication / double-strand break repair via nonhomologous end joining / structural constituent of chromatin / peroxisome 類似検索 - 分子機能 DNA replication checkpoint mediator, MRC1 domain / MRC1-like domain / : / SSRP1 PH domain / Claspin / FACT complex subunit SSRP1/POB3 / SSRP1, dimerization domain / FACT complex subunit SSRP1/POB3, N-terminal PH domain / SSRP1 domain superfamily / : ... DNA replication checkpoint mediator, MRC1 domain / MRC1-like domain / : / SSRP1 PH domain / Claspin / FACT complex subunit SSRP1/POB3 / SSRP1, dimerization domain / FACT complex subunit SSRP1/POB3, N-terminal PH domain / SSRP1 domain superfamily / : / Structure-specific recognition protein (SSRP1) / POB3-like N-terminal PH domain / FACT complex subunit Spt16, peptidase M24-like domain / : / FACT complex subunit SPT16, C-terminal domain / Chromosome segregation in meiosis protein 3 / TIPIN/Csm3/Swi3 / Replication Fork Protection Component Swi3 / : / FACT complex subunit SPT16 PH-like domain / FACT complex subunit Spt16 domain / FACT complex subunit (SPT16/CDC68) / FACT complex subunit (SPT16/CDC68) / FACT complex subunit Spt16, N-terminal lobe domain / FACT complex subunit Spt16 / FACT complex subunit SPT16 N-terminal lobe domain / FACT complex subunit SPT16 N-terminal lobe domain / DNA polymerase epsilon, subunit B / Timeless, N-terminal / Timeless / Timeless protein / : / DNA polymerase alpha-binding protein Ctf4, C-terminal domain / Minichromosome loss protein Mcl1, middle region / Minichromosome loss protein, Mcl1, middle region / Histone chaperone RTT106/FACT complex subunit SPT16-like, middle domain / Histone chaperone Rttp106-like, middle domain / Histone chaperone Rttp106-like / : / : / DNA polymerase epsilon catalytic subunit A, thumb domain / Zinc finger domain of DNA polymerase-epsilon / Zinc finger domain of DNA polymerase-epsilon / DNA polymerase epsilon, catalytic subunit A, C-terminal / DNA polymerase epsilon catalytic subunit / : / : / Domain of unknown function (DUF1744) / PSF3 N-terminal domain / PSF1 C-terminal domain / DUF1744 / CDC45 family / CDC45 / GINS complex, subunit Psf3 / DNA replication complex GINS protein SLD5, C-terminal / GINS complex, subunit Psf3 superfamily / GINS complex protein Sld5, alpha-helical domain / DNA replication complex GINS protein SLD5 C-terminus / GINS complex subunit Sld5 / : / MCM3 winged helix domain / GINS subunit, domain A / GINS complex protein helical bundle domain / GINS complex, subunit Psf1 / GINS, helical bundle-like domain superfamily / DNA polymerase alpha/delta/epsilon, subunit B / DNA polymerase alpha/epsilon subunit B / Creatinase/Aminopeptidase P/Spt16, N-terminal / : / MCM5, C-terminal domain / DNA replication licensing factor Mcm5 / MCM4, winged helix domain / DNA replication licensing factor Mcm3 / Mini-chromosome maintenance complex protein 4 / : / MCM3-like, winged helix domain / DNA replication licensing factor Mcm6 / DNA replication licensing factor Mcm7 / Mcm6, C-terminal winged-helix domain / MCM6 C-terminal winged-helix domain / DNA replication licensing factor Mcm2 / Mini-chromosome maintenance protein 2 / Mini-chromosome maintenance, conserved site / MCM family signature. / MCM N-terminal domain / MCM N-terminal domain / MCM OB domain / MCM OB domain / Mini-chromosome maintenance protein / MCM, AAA-lid domain / MCM P-loop domain / MCM AAA-lid domain / MCM family C-terminal AAA(+) ATPase domain (MCM-CTD) profile. / minichromosome maintenance proteins / MCM domain / DNA polymerase family B, thumb domain / Peptidase M24 / Metallopeptidase family M24 / Creatinase/aminopeptidase-like / DNA polymerase family B, exonuclease domain 類似検索 - ドメイン・相同性 DNA replication licensing factor MCM2 / Histone H3 / DNA replication licensing factor MCM7 / Histone H2B.2 / Histone H4 / Histone H2A.1 / DNA polymerase epsilon catalytic subunit A / DNA replication licensing factor MCM3 / DNA polymerase epsilon subunit B / Mediator of replication checkpoint protein 1 ... DNA replication licensing factor MCM2 / Histone H3 / DNA replication licensing factor MCM7 / Histone H2B.2 / Histone H4 / Histone H2A.1 / DNA polymerase epsilon catalytic subunit A / DNA replication licensing factor MCM3 / DNA polymerase epsilon subunit B / Mediator of replication checkpoint protein 1 / Minichromosome maintenance protein 5 / DNA replication licensing factor MCM4 / FACT complex subunit SPT16 / DNA replication licensing factor MCM6 / Topoisomerase 1-associated factor 1 / DNA polymerase alpha-binding protein / DNA replication complex GINS protein SLD5 / FACT complex subunit POB3 / Chromosome segregation in meiosis protein 3 / Cell division control protein 45 / DNA replication complex GINS protein PSF3 / DNA replication complex GINS protein PSF1 類似検索 - 構成要素生物種 Saccharomyces cerevisiae (パン酵母)手法 単粒子再構成法 / クライオ電子顕微鏡法 / 解像度 : 3.7 Å 詳細 データ登録者Li N / Gao Y / Yu D / Gao N / Zhai Y 資金援助 中国, 1件 詳細 詳細を隠すOrganization Grant number 国 National Natural Science Foundation of China (NSFC) 中国
引用ジャーナル : Nature / 年 : 2024タイトル : Parental histone transfer caught at the replication fork.著者: Ningning Li / Yuan Gao / Yujie Zhang / Daqi Yu / Jianwei Lin / Jianxun Feng / Jian Li / Zhichun Xu / Yingyi Zhang / Shangyu Dang / Keda Zhou / Yang Liu / Xiang David Li / Bik Kwoon Tye / Qing ... 著者 : Ningning Li / Yuan Gao / Yujie Zhang / Daqi Yu / Jianwei Lin / Jianxun Feng / Jian Li / Zhichun Xu / Yingyi Zhang / Shangyu Dang / Keda Zhou / Yang Liu / Xiang David Li / Bik Kwoon Tye / Qing Li / Ning Gao / Yuanliang Zhai / 要旨 : In eukaryotes, DNA compacts into chromatin through nucleosomes. Replication of the eukaryotic genome must be coupled to the transmission of the epigenome encoded in the chromatin. Here we report cryo- ... In eukaryotes, DNA compacts into chromatin through nucleosomes. Replication of the eukaryotic genome must be coupled to the transmission of the epigenome encoded in the chromatin. Here we report cryo-electron microscopy structures of yeast (Saccharomyces cerevisiae) replisomes associated with the FACT (facilitates chromatin transactions) complex (comprising Spt16 and Pob3) and an evicted histone hexamer. In these structures, FACT is positioned at the front end of the replisome by engaging with the parental DNA duplex to capture the histones through the middle domain and the acidic carboxyl-terminal domain of Spt16. The H2A-H2B dimer chaperoned by the carboxyl-terminal domain of Spt16 is stably tethered to the H3-H4 tetramer, while the vacant H2A-H2B site is occupied by the histone-binding domain of Mcm2. The Mcm2 histone-binding domain wraps around the DNA-binding surface of one H3-H4 dimer and extends across the tetramerization interface of the H3-H4 tetramer to the binding site of Spt16 middle domain before becoming disordered. This arrangement leaves the remaining DNA-binding surface of the other H3-H4 dimer exposed to additional interactions for further processing. The Mcm2 histone-binding domain and its downstream linker region are nested on top of Tof1, relocating the parental histones to the replisome front for transfer to the newly synthesized lagging-strand DNA. Our findings offer crucial structural insights into the mechanism of replication-coupled histone recycling for maintaining epigenetic inheritance. 履歴 登録 2023年12月15日 - ヘッダ(付随情報) 公開 2024年2月14日 - マップ公開 2024年2月14日 - 更新 2024年10月30日 - 現状 2024年10月30日 処理サイト : PDBj / 状態 : 公開
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