[English] 日本語
![](img/lk-miru.gif)
- EMDB-33522: The pre-fusion structure of Thogotovirus dhori envelope glycoprotein -
+
Open data
-
Basic information
Entry | ![]() | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
Title | The pre-fusion structure of Thogotovirus dhori envelope glycoprotein | |||||||||
![]() | ||||||||||
![]() |
| |||||||||
![]() | Viral surface protein / STRUCTURAL PROTEIN | |||||||||
Function / homology | Baculovirus Gp64, envelope glycoprotein / Baculovirus gp64 envelope glycoprotein family / modulation by virus of host process / viral envelope / virion membrane / membrane / Envelope glycoprotein![]() | |||||||||
Biological species | ![]() | |||||||||
Method | single particle reconstruction / cryo EM / Resolution: 3.3 Å | |||||||||
![]() | Shan YY / Zhang MF / Pei DQ | |||||||||
Funding support | ![]()
| |||||||||
![]() | ![]() Title: Pre- and post-fusion class III glycoprotein structures reveal viral fusion mechanism Authors: Shan YY / Zhang MF / Pei DQ | |||||||||
History |
|
-
Structure visualization
Supplemental images |
---|
-
Downloads & links
-EMDB archive
Map data | ![]() | 398.3 MB | ![]() | |
---|---|---|---|---|
Header (meta data) | ![]() ![]() | 12.5 KB 12.5 KB | Display Display | ![]() |
FSC (resolution estimation) | ![]() | 15.8 KB | Display | ![]() |
Images | ![]() | 33.8 KB | ||
Others | ![]() ![]() | 391.9 MB 391.9 MB | ||
Archive directory | ![]() ![]() | HTTPS FTP |
-Validation report
Summary document | ![]() | 958.4 KB | Display | ![]() |
---|---|---|---|---|
Full document | ![]() | 958 KB | Display | |
Data in XML | ![]() | 25.3 KB | Display | |
Data in CIF | ![]() | 33.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 7xymMC M: atomic model generated by this map C: citing same article ( |
---|---|
Similar structure data | Similarity search - Function & homology ![]() |
-
Links
EMDB pages | ![]() ![]() |
---|
-
Map
File | ![]() | ||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Voxel size | X=Y=Z: 0.849 Å | ||||||||||||||||||||
Density |
| ||||||||||||||||||||
Symmetry | Space group: 1 | ||||||||||||||||||||
Details | EMDB XML:
|
-Supplemental data
-Half map: #1
File | emd_33522_half_map_1.map | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Projections & Slices |
| ||||||||||||
Density Histograms |
-Half map: #2
File | emd_33522_half_map_2.map | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Projections & Slices |
| ||||||||||||
Density Histograms |
-
Sample components
-Entire : Thogotovirus dhori envelope glycoprotein
Entire | Name: Thogotovirus dhori envelope glycoprotein |
---|---|
Components |
|
-Supramolecule #1: Thogotovirus dhori envelope glycoprotein
Supramolecule | Name: Thogotovirus dhori envelope glycoprotein / type: complex / ID: 1 / Parent: 0 / Macromolecule list: all |
---|---|
Source (natural) | Organism: ![]() |
-Macromolecule #1: Envelope glycoprotein
Macromolecule | Name: Envelope glycoprotein / type: protein_or_peptide / ID: 1 / Number of copies: 3 / Enantiomer: LEVO |
---|---|
Source (natural) | Organism: ![]() |
Molecular weight | Theoretical: 58.674496 KDa |
Recombinant expression | Organism: ![]() |
Sequence | String: MDSTIRLVAT IFLISLTQQI EVCNKAQQQG PYTLVDYQEK PLNISRIQIK VVKTSVATKG LNFHIGYRAV WRSYCYNGGS LDKNTGCYN DLIPKSPTES ELRTWSKSQK CCTGPDAVDA WGSDARICWA EWKMELCHTA KELKKYSNNN HFAYHTCNLS W RCGLKSTH ...String: MDSTIRLVAT IFLISLTQQI EVCNKAQQQG PYTLVDYQEK PLNISRIQIK VVKTSVATKG LNFHIGYRAV WRSYCYNGGS LDKNTGCYN DLIPKSPTES ELRTWSKSQK CCTGPDAVDA WGSDARICWA EWKMELCHTA KELKKYSNNN HFAYHTCNLS W RCGLKSTH IEVRLQASGG LVSMVAVMPN GTLIPIEGTR PTYWTEDSFA YLYDPAGTEK KTESTFLWCF KEHIRPTTEL SG AVYDTHY LGGTYDKNPQ FNYYCRDNGY YFELPANRLV CLPTSCYKRE GAIVNTMHPD TWKVSEKLHS ASQFDVNNVV HSL VYETEG LRLALSQLDH RFATLSRLFN RLTQSLAKID DRLLGTLLGQ DVSSKFISPT KFMLSPCLST PEGDSNCHNH SIYR DGRWV HNSDPTQCFS LSKSQPVDLY SFKELWLPQL LDVNVEGVVA DEEGWSFVAQ SKQALIDTMT YTKNGGKGTS LEDVL GYPS GWINGKLQGL LLNGAISWVV VIGVVLVGVC LMRRVF UniProtKB: Envelope glycoprotein |
-Experimental details
-Structure determination
Method | cryo EM |
---|---|
![]() | single particle reconstruction |
Aggregation state | particle |
-
Sample preparation
Buffer | pH: 7.4 |
---|---|
Vitrification | Cryogen name: ETHANE |
-
Electron microscopy
Microscope | FEI TITAN KRIOS |
---|---|
Image recording | Film or detector model: GATAN K3 (6k x 4k) / Average electron dose: 60.0 e/Å2 |
Electron beam | Acceleration voltage: 300 kV / Electron source: ![]() |
Electron optics | Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD / Nominal defocus max: 2.0 µm / Nominal defocus min: 1.5 µm |
Experimental equipment | ![]() Model: Titan Krios / Image courtesy: FEI Company |