ChemComp-NH9: [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonoox...

Basic information

• Entry: Database: PDB chemical components / ID: NH9
• Name: Name: [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)oxolan-2-yl]methyl (3R)-4-({3-[(2-{[(1S)-1-{[(2R,3S,4S,5R,6R)-4,5-dihydroxy-6-{[(R)-hydroxy{[(R)-hydroxy{[(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)oxolan-2-yl]methoxy}phosphoryl]oxy}phosphoryl]oxy}-2-methyloxan-3-yl]amino}ethyl]sulfanyl}ethyl)amino]-3-oxopropyl}amino)-3-hydroxy-2,2-dimethyl-4-oxobutyl dihydrogen diphosphate (non-preferred name)

Chemical information

Composition

Formula: C₃₉H₆₅N₁₀O₃₀P₅S / Number of atoms: 150 / Formula weight: 1340.916 / Formal charge: 0

Others

7txs

Type: non-polymer / PDB classification: HETAIN / Three letter code: NH9 / Ideal coordinates details: Corina / Model coordinates PDB-ID: 7TXS

History

Create component	Feb 10, 2022
Initial release	Mar 9, 2022

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Details

SMILES

• ACDLabs 12.01: O=P(O)(O)OC1C(O)C(OC1COP(=O)(O)OP(=O)(O)OCC(C)(C)C(O)C(=O)NCCC(=O)NCCSC(C)NC1C(C)OC(OP(=O)(O)OP(=O)(O)OCC2OC(CC2O)N2C=C(C)C(=O)NC2=O)C(O)C1O)n1cnc2c(N)ncnc21
• CACTVS 3.385: C[CH](N[CH]1[CH](C)O[CH](O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH](C[CH]2O)N3C=C(C)C(=O)NC3=O)[CH](O)[CH]1O)SCCNC(=O)CCNC(=O)[CH](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[CH]4O[CH]([CH](O)[CH]4O[P](O)(O)=O)n5cnc6c(N)ncnc56
• OpenEye OEToolkits 2.0.7: CC1C(C(C(C(O1)OP(=O)(O)OP(=O)(O)OCC2C(CC(O2)N3C=C(C(=O)NC3=O)C)O)O)O)NC(C)SCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)n5cnc6c5ncnc6N)O)OP(=O)(O)O)O

SMILES CANONICAL

• CACTVS 3.385: C[C@@H](N[C@@H]1[C@@H](C)O[C@H](O[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H](C[C@@H]2O)N3C=C(C)C(=O)NC3=O)[C@H](O)[C@H]1O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[C@H]4O[C@H]([C@H](O)[C@@H]4O[P](O)(O)=O)n5cnc6c(N)ncnc56
• OpenEye OEToolkits 2.0.7: C[C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)OP(=O)(O)OP(=O)(O)OC[C@@H]2[C@H](C[C@@H](O2)N3C=C(C(=O)NC3=O)C)O)O)O)N[C@H](C)SCCNC(=O)CCNC(=O)[C@@H](C(C)(C)COP(=O)(O)OP(=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5ncnc6N)O)OP(=O)(O)O)O

InChI

• InChI 1.03: InChI=1S/C39H65N10O30P5S/c1-17-11-48(38(58)47-34(17)56)24-10-20(50)21(74-24)12-70-82(64,65)79-84(68,69)77-37-28(53)27(52)25(18(2)73-37)46-19(3)85-9-8-41-23(51)6-7-42-35(57)31(55)39(4,5)14-72-83(66,67)78-81(62,63)71-13-22-30(76-80(59,60)61)29(54)36(75-22)49-16-45-26-32(40)43-15-44-33(26)49/h11,15-16,18-22,24-25,27-31,36-37,46,50,52-55H,6-10,12-14H2,1-5H3,(H,41,51)(H,42,57)(H,62,63)(H,64,65)(H,66,67)(H,68,69)(H2,40,43,44)(H,47,56,58)(H2,59,60,61)/t18-,19+,20+,21-,22-,24-,25-,27+,28-,29-,30-,31+,36-,37-/m1/s1

InChIKey

• InChI 1.03: CAIUZPLIIIAOAA-MGECECIFSA-N

SYSTEMATIC NAME

• ACDLabs 12.01: [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)oxolan-2-yl]methyl (3R)-4-({3-[(2-{[(1S)-1-{[(2R,3S,4S,5R,6R)-4,5-dihydroxy-6-{[(R)-hydroxy{[(R)-hydroxy{[(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)oxolan-2-yl]methoxy}phosphoryl]oxy}phosphoryl]oxy}-2-methyloxan-3-yl]amino}ethyl]sulfanyl}ethyl)amino]-3-oxopropyl}amino)-3-hydroxy-2,2-dimethyl-4-oxobutyl dihydrogen diphosphate (non-preferred name)
• OpenEye OEToolkits 2.0.7: [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(3~{R})-2,2-dimethyl-4-[[3-[2-[(1~{S})-1-[[(2~{R},3~{S},4~{S},5~{R},6~{R})-2-methyl-6-[[[(2~{R},3~{S},5~{R})-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-4,5-bis(oxidanyl)oxan-3-yl]amino]ethyl]sulfanylethylamino]-3-oxidanylidene-propyl]amino]-3-oxidanyl-4-oxidanylidene-butyl] hydrogen phosphate

PDB entries

Showing all 1 items

PDB-7txs:
X-ray structure of the VioB N-aetyltransferase from Acinetobacter baumannii in the presence of a reaction intermediate