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- ChemComp-CKB: 1-beta-D-glucopyranosyl-5-methylpyrimidine-2,4(1H,3H)-dione -

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Basic information

EntryDatabase: PDB chemical components / ID: CKB
NameName: 1-beta-D-glucopyranosyl-5-methylpyrimidine-2,4(1H,3H)-dione
Synonyms: 1-D-glucopyranosyl-thymine; 1-beta-D-glucosyl-5-methylpyrimidine-2,4(1H,3H)-dione;

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Chemical information

Composition
Formula: C11H16N2O7 / Number of atoms: 36 / Formula weight: 288.254 / Formal charge: 0
Others

3bd7

Type: D-saccharide / PDB classification: ATOMS / Three letter code: CKB / Ideal coordinates details: Corina / Model coordinates PDB-ID: 3BD7
History
Create componentNov 16, 2007
Modify descriptorJun 4, 2011
Other modificationJul 3, 2020
Modify synonymsJul 17, 2020
Modify internal typeJul 17, 2020
Modify linking typeJul 17, 2020
Modify atom idJul 17, 2020
Modify component atom idJul 17, 2020
Modify leaving atom flagJul 17, 2020
External linksUniChem / ChemSpider / BindingDB / ChEMBL / Nikkaji / PubChem / ZINC / Wikipedia search / Google search

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Details

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SMILES

ACDLabs 10.04O=C1NC(=O)N(C=C1C)C2OC(C(O)C(O)C2O)CO
CACTVS 3.341CC1=CN([CH]2O[CH](CO)[CH](O)[CH](O)[CH]2O)C(=O)NC1=O
OpenEye OEToolkits 1.5.0CC1=CN(C(=O)NC1=O)C2C(C(C(C(O2)CO)O)O)O

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SMILES CANONICAL

CACTVS 3.341CC1=CN([C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)C(=O)NC1=O
OpenEye OEToolkits 1.5.0CC1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O

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InChI

InChI 1.03InChI=1S/C11H16N2O7/c1-4-2-13(11(19)12-9(4)18)10-8(17)7(16)6(15)5(3-14)20-10/h2,5-8,10,14-17H,3H2,1H3,(H,12,18,19)/t5-,6-,7+,8-,10-/m1/s1

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InChIKey

InChI 1.03RMXUFBPORJBBEZ-HPFNVAMJSA-N

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SYSTEMATIC NAME

ACDLabs 10.041-beta-D-glucopyranosyl-5-methylpyrimidine-2,4(1H,3H)-dione
OpenEye OEToolkits 1.5.05-methyl-1-[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]pyrimidine-2,4-dione

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PDB entries

Showing all 1 items

PDB-3bd7:
Glycogen Phosphorylase complex with 1(-D-glucopyranosyl) thymine

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