登録情報 | データベース: PDB / ID: 8pfv |
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タイトル | X-ray structure of the adduct formed upon reaction of Lysozyme with [Ru2Cl(DAniF)(O2CCH3)3] in condition A |
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要素 | Lysozyme C |
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キーワード | PROTEIN BINDING / Ruthenium / Protein interaction / Metallodrug / Diruthenium / Hydrolase |
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機能・相同性 | 機能・相同性情報
Lactose synthesis / Antimicrobial peptides / Neutrophil degranulation / beta-N-acetylglucosaminidase activity / cell wall macromolecule catabolic process / lysozyme / lysozyme activity / defense response to Gram-negative bacterium / killing of cells of another organism / defense response to Gram-positive bacterium ...Lactose synthesis / Antimicrobial peptides / Neutrophil degranulation / beta-N-acetylglucosaminidase activity / cell wall macromolecule catabolic process / lysozyme / lysozyme activity / defense response to Gram-negative bacterium / killing of cells of another organism / defense response to Gram-positive bacterium / defense response to bacterium / endoplasmic reticulum / extracellular space / identical protein binding / cytoplasm類似検索 - 分子機能 Glycoside hydrolase, family 22, lysozyme / Glycoside hydrolase family 22 domain / Glycosyl hydrolases family 22 (GH22) domain signature. / Glycoside hydrolase, family 22 / C-type lysozyme/alpha-lactalbumin family / Glycosyl hydrolases family 22 (GH22) domain profile. / Alpha-lactalbumin / lysozyme C / Lysozyme-like domain superfamily類似検索 - ドメイン・相同性 |
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生物種 | ![](img/tx_bird.gif) Gallus gallus (ニワトリ) |
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手法 | X線回折 / シンクロトロン / 分子置換 / 解像度: 1.46 Å |
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データ登録者 | Teran, A. / Ferraro, G. / Merlino, A. |
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資金援助 | 1件 |
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引用 | ジャーナル: Inorg Chem Front / 年: 2023 タイトル: Charge effect in protein metalation reactions by diruthenium complexes 著者: Herrero Dominguez, S. / Teran, A. / Ferraro, G. / Sanchez-Pelaez, A.E. / Merlino, A. |
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履歴 | 登録 | 2023年6月16日 | 登録サイト: PDBE / 処理サイト: PDBE |
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改定 1.0 | 2023年7月19日 | Provider: repository / タイプ: Initial release |
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改定 2.0 | 2023年10月18日 | Group: Atomic model / Data collection ...Atomic model / Data collection / Derived calculations / Refinement description / Structure summary カテゴリ: atom_site / chem_comp_atom ...atom_site / chem_comp_atom / chem_comp_bond / entity / pdbx_nonpoly_scheme / pdbx_struct_assembly / pdbx_struct_assembly_gen / pdbx_struct_conn_angle / pdbx_struct_special_symmetry / refine / refine_hist / refine_ls_shell / reflns / struct_asym / struct_conn Item: _entity.pdbx_number_of_molecules / _pdbx_struct_assembly.details ..._entity.pdbx_number_of_molecules / _pdbx_struct_assembly.details / _pdbx_struct_assembly_gen.asym_id_list / _pdbx_struct_conn_angle.ptnr1_auth_seq_id / _pdbx_struct_conn_angle.ptnr1_label_asym_id / _pdbx_struct_conn_angle.ptnr2_auth_seq_id / _pdbx_struct_conn_angle.ptnr2_label_asym_id / _pdbx_struct_conn_angle.ptnr3_auth_seq_id / _pdbx_struct_conn_angle.ptnr3_label_asym_id / _pdbx_struct_special_symmetry.label_asym_id / _refine.ls_d_res_low / _refine.ls_wR_factor_R_free / _refine.ls_wR_factor_R_work / _refine.pdbx_average_fsc_free / _refine.pdbx_average_fsc_work / _refine_hist.d_res_low / _refine_hist.number_atoms_total / _refine_hist.pdbx_number_atoms_ligand / _refine_ls_shell.R_factor_all / _refine_ls_shell.d_res_low / _refine_ls_shell.number_reflns_all / _refine_ls_shell.pdbx_fsc_free / _refine_ls_shell.pdbx_fsc_work / _refine_ls_shell.pdbx_total_number_of_bins_used / _refine_ls_shell.wR_factor_R_work / _reflns.d_resolution_low / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id 解説: Ligand identity / Provider: author / タイプ: Coordinate replacement |
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