virion component / base-excision repair / double-strand break repair via nonhomologous end joining / DNA-directed DNA polymerase / DNA-directed DNA polymerase activity / DNA binding / metal ion binding Similarity search - Function
Polymerase, nucleotidyl transferase domain / Nucleotidyltransferase domain / DNA polymerase family X, binding site / DNA polymerase family X signature. / DNA polymerase family X / DNA polymerase beta, thumb domain / DNA polymerase beta thumb / DNA polymerase, thumb domain superfamily / Nucleotidyltransferase superfamily Similarity search - Domain/homology
A: Repair DNA polymerase X B: Repair DNA polymerase X C: Repair DNA polymerase X D: Repair DNA polymerase X E: DNA (5'-D(*CP*GP*GP*AP*TP*CP*C)-3') F: DNA (5'-D(*CP*GP*GP*AP*TP*CP*C)-3') G: DNA (5'-D(*CP*GP*GP*AP*TP*CP*C)-3') H: DNA (5'-D(*CP*GP*GP*AP*TP*CP*C)-3') hetero molecules
Method to determine structure: MOLECULAR REPLACEMENT / Resolution: 2.1→30 Å / Cor.coef. Fo:Fc: 0.952 / Cor.coef. Fo:Fc free: 0.93 / SU B: 12.226 / SU ML: 0.142 / Cross valid method: THROUGHOUT / ESU R Free: 0.203 / Stereochemistry target values: MAXIMUM LIKELIHOOD / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.2273
2431
5.3 %
RANDOM
Rwork
0.18069
-
-
-
obs
0.18306
43767
87.36 %
-
Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK