プロトコル: SINGLE WAVELENGTH / 単色(M)・ラウエ(L): M / 散乱光タイプ: x-ray
放射波長
波長: 0.9763 Å / 相対比: 1
反射
解像度: 2.119→19.77 Å / Num. obs: 35635 / % possible obs: 86.2 % / 冗長度: 6.49 % / CC1/2: 0.999 / Rrim(I) all: 0.115 / Net I/σ(I): 16.69
反射 シェル
解像度: 2.12→2.25 Å / Mean I/σ(I) obs: 1.66 / Num. unique obs: 5751 / CC1/2: 0.701
-
解析
ソフトウェア
名称
バージョン
分類
REFMAC
5.8.0267
精密化
XDS
データ削減
XSCALE
データスケーリング
MOLREP
位相決定
精密化
構造決定の手法: 分子置換 開始モデル: in house model 解像度: 2.119→19.768 Å / Cor.coef. Fo:Fc: 0.949 / Cor.coef. Fo:Fc free: 0.93 / WRfactor Rfree: 0.272 / WRfactor Rwork: 0.219 / SU B: 10.535 / SU ML: 0.245 / Average fsc free: 0.7544 / Average fsc work: 0.7705 / 交差検証法: THROUGHOUT / ESU R: 0.285 / ESU R Free: 0.237 / 詳細: Hydrogens have been added in their riding positions
Rfactor
反射数
%反射
Rfree
0.2879
1782
5.001 %
Rwork
0.2387
33851
-
all
0.241
-
-
obs
-
35633
86.176 %
溶媒の処理
イオンプローブ半径: 0.8 Å / 減衰半径: 0.8 Å / VDWプローブ半径: 1.2 Å / 溶媒モデル: MASK BULK SOLVENT
原子変位パラメータ
Biso mean: 60.235 Å2
Baniso -1
Baniso -2
Baniso -3
1-
-1.059 Å2
-0 Å2
-0 Å2
2-
-
4.994 Å2
0 Å2
3-
-
-
-3.935 Å2
精密化ステップ
サイクル: LAST / 解像度: 2.119→19.768 Å
タンパク質
核酸
リガンド
溶媒
全体
原子数
4344
0
76
41
4461
拘束条件
Refine-ID
タイプ
Dev ideal
Dev ideal target
数
X-RAY DIFFRACTION
r_bond_refined_d
0.004
0.013
4498
X-RAY DIFFRACTION
r_bond_other_d
0.001
0.016
4264
X-RAY DIFFRACTION
r_angle_refined_deg
1.239
1.663
6075
X-RAY DIFFRACTION
r_angle_other_deg
1.11
1.593
9790
X-RAY DIFFRACTION
r_dihedral_angle_1_deg
5.993
5
542
X-RAY DIFFRACTION
r_dihedral_angle_2_deg
34.303
24.072
221
X-RAY DIFFRACTION
r_dihedral_angle_3_deg
14.972
15
801
X-RAY DIFFRACTION
r_dihedral_angle_4_deg
19.593
15
18
X-RAY DIFFRACTION
r_chiral_restr
0.044
0.2
585
X-RAY DIFFRACTION
r_gen_planes_refined
0.004
0.02
5015
X-RAY DIFFRACTION
r_gen_planes_other
0.001
0.02
937
X-RAY DIFFRACTION
r_nbd_refined
0.185
0.2
994
X-RAY DIFFRACTION
r_symmetry_nbd_other
0.177
0.2
4295
X-RAY DIFFRACTION
r_nbtor_refined
0.156
0.2
2197
X-RAY DIFFRACTION
r_symmetry_nbtor_other
0.074
0.2
2048
X-RAY DIFFRACTION
r_xyhbond_nbd_refined
0.134
0.2
125
X-RAY DIFFRACTION
r_symmetry_xyhbond_nbd_other
0.025
0.2
4
X-RAY DIFFRACTION
r_symmetry_nbd_refined
0.239
0.2
25
X-RAY DIFFRACTION
r_nbd_other
0.221
0.2
100
X-RAY DIFFRACTION
r_symmetry_xyhbond_nbd_refined
0.26
0.2
7
X-RAY DIFFRACTION
r_xyhbond_nbd_other
0.105
0.2
2
X-RAY DIFFRACTION
r_mcbond_it
7.269
6.051
2195
X-RAY DIFFRACTION
r_mcbond_other
7.267
6.051
2194
X-RAY DIFFRACTION
r_mcangle_it
9.914
13.581
2728
X-RAY DIFFRACTION
r_mcangle_other
9.913
13.582
2729
X-RAY DIFFRACTION
r_scbond_it
8.016
6.745
2303
X-RAY DIFFRACTION
r_scbond_other
7.999
6.744
2300
X-RAY DIFFRACTION
r_scangle_it
11.666
14.762
3347
X-RAY DIFFRACTION
r_scangle_other
11.639
14.761
3343
X-RAY DIFFRACTION
r_lrange_it
14.24
75.643
4990
X-RAY DIFFRACTION
r_lrange_other
14.255
75.658
4988
LS精密化 シェル
Refine-ID: X-RAY DIFFRACTION / Total num. of bins used: 20