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Yorodumi- PDB-7aqm: ADP-ribosylserine hydrolase ARH3 of Latimeria chalumnae in comple... -
+Open data
-Basic information
Entry | Database: PDB / ID: 7aqm | |||||||||
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Title | ADP-ribosylserine hydrolase ARH3 of Latimeria chalumnae in complex with alpha-1''-O-methyl-ADP-ribose (meADPr) | |||||||||
Components | ADP-ribosylhydrolase like 2 | |||||||||
Keywords | HYDROLASE / ADP-ribosylserine hydrolase / ARH3 / Latimeria chalumnae / alpha-1''-O-methyl-ADP ribose | |||||||||
Function / homology | Function and homology information peptidyl-serine ADP-deribosylation / poly(ADP-ribose) glycohydrolase / poly(ADP-ribose) glycohydrolase activity / negative regulation of necroptotic process / Hydrolases; Acting on carbon-nitrogen bonds, other than peptide bonds; In linear amides / Hydrolases; Glycosylases; Hydrolysing N-glycosyl compounds / chromosome / mitochondrial matrix / DNA repair / magnesium ion binding / nucleus Similarity search - Function | |||||||||
Biological species | Latimeria chalumnae (coelacanth) | |||||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.5 Å | |||||||||
Authors | Rack, J.G.M. / Zorzini, V. / Ahel, I. | |||||||||
Funding support | United Kingdom, 2items
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Citation | Journal: Nat Commun / Year: 2021 Title: Mechanistic insights into the three steps of poly(ADP-ribosylation) reversal. Authors: Rack, J.G.M. / Liu, Q. / Zorzini, V. / Voorneveld, J. / Ariza, A. / Honarmand Ebrahimi, K. / Reber, J.M. / Krassnig, S.C. / Ahel, D. / van der Marel, G.A. / Mangerich, A. / McCullagh, J.S.O. ...Authors: Rack, J.G.M. / Liu, Q. / Zorzini, V. / Voorneveld, J. / Ariza, A. / Honarmand Ebrahimi, K. / Reber, J.M. / Krassnig, S.C. / Ahel, D. / van der Marel, G.A. / Mangerich, A. / McCullagh, J.S.O. / Filippov, D.V. / Ahel, I. | |||||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 7aqm.cif.gz | 269.3 KB | Display | PDBx/mmCIF format |
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PDB format | pdb7aqm.ent.gz | 214.8 KB | Display | PDB format |
PDBx/mmJSON format | 7aqm.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 7aqm_validation.pdf.gz | 1.2 MB | Display | wwPDB validaton report |
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Full document | 7aqm_full_validation.pdf.gz | 1.2 MB | Display | |
Data in XML | 7aqm_validation.xml.gz | 25.3 KB | Display | |
Data in CIF | 7aqm_validation.cif.gz | 34.6 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/aq/7aqm ftp://data.pdbj.org/pub/pdb/validation_reports/aq/7aqm | HTTPS FTP |
-Related structure data
Related structure data | 7akrC 7aksC 7arwC 6hh3S S: Starting model for refinement C: citing same article (ref.) |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments: Ens-ID: 1
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