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Yorodumi- PDB-2rcr: STRUCTURE OF THE MEMBRANE-BOUND PROTEIN PHOTOSYNTHETIC REACTION C... -
+Open data
-Basic information
Entry | Database: PDB / ID: 2rcr | ||||||
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Title | STRUCTURE OF THE MEMBRANE-BOUND PROTEIN PHOTOSYNTHETIC REACTION CENTER FROM RHODOBACTER SPHAEROIDES | ||||||
Components | (PHOTOSYNTHETIC REACTION CENTER ...) x 3 | ||||||
Keywords | PHOTOSYNTHETIC REACTION CENTER | ||||||
Function / homology | Function and homology information : / plasma membrane-derived chromatophore membrane / plasma membrane light-harvesting complex / bacteriochlorophyll binding / photosynthesis, light reaction / electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity / photosynthetic electron transport in photosystem II / membrane => GO:0016020 / metal ion binding Similarity search - Function | ||||||
Biological species | Rhodobacter sphaeroides (bacteria) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 3.1 Å | ||||||
Authors | Chang, C.-H. / Norris, J. / Schiffer, M. | ||||||
Citation | Journal: Biochemistry / Year: 1991 Title: Structure of the membrane-bound protein photosynthetic reaction center from Rhodobacter sphaeroides. Authors: Chang, C.H. / el-Kabbani, O. / Tiede, D. / Norris, J. / Schiffer, M. #1: Journal: Biochemistry / Year: 1991 Title: Comparison of Reaction Centers from Rhodobacter Sphaeroides and Rhodobacter Viridis: Overall Architecture and Protein-Pigment Interactions Authors: El-Kabbani, O. / Chang, C.-H. / Tiede, D. / Norris, J. / Schiffer, M. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2rcr.cif.gz | 173.2 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2rcr.ent.gz | 127.1 KB | Display | PDB format |
PDBx/mmJSON format | 2rcr.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 2rcr_validation.pdf.gz | 778.9 KB | Display | wwPDB validaton report |
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Full document | 2rcr_full_validation.pdf.gz | 940.2 KB | Display | |
Data in XML | 2rcr_validation.xml.gz | 45.8 KB | Display | |
Data in CIF | 2rcr_validation.cif.gz | 59.7 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/rc/2rcr ftp://data.pdbj.org/pub/pdb/validation_reports/rc/2rcr | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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Atom site foot note | 1: RESIDUES PRO M 48 AND PRO H 41 ARE CIS PROLINES. |
-Components
-PHOTOSYNTHETIC REACTION CENTER ... , 3 types, 3 molecules LMH
#1: Protein | Mass: 31346.389 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Rhodobacter sphaeroides (bacteria) / References: UniProt: P02954, UniProt: P0C0Y8*PLUS |
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#2: Protein | Mass: 34398.543 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Rhodobacter sphaeroides (bacteria) / References: UniProt: P02953, UniProt: P0C0Y9*PLUS |
#3: Protein | Mass: 28066.322 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Rhodobacter sphaeroides (bacteria) / References: UniProt: P11846, UniProt: P0C0Y7*PLUS |
-Non-polymers , 4 types, 9 molecules
#4: Chemical | ChemComp-BCL / #5: Chemical | #6: Chemical | #7: Chemical | ChemComp-FE / | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 4.16 Å3/Da / Density % sol: 70.44 % | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Crystal grow | *PLUS pH: 8 / Method: vapor diffusion | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 3.1 Å / Lowest resolution: 8 Å / Num. obs: 13493 / Observed criterion σ(F): 2.5 / Rmerge F obs: 0.09 / Num. measured all: 22866 |
-Processing
Software | Name: PROLSQ / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Refinement | Rfactor obs: 0.22 / Highest resolution: 3.1 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 3.1 Å
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Refine LS restraints |
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Refinement | *PLUS Highest resolution: 3.1 Å / Lowest resolution: 8 Å / Num. reflection obs: 13493 / σ(F): 2.5 / Rfactor obs: 0.22 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS |