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- EMDB-27383: Native serotonin transporter in complex with 15B8 Fab antibody in... -
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Open data
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Basic information
Entry | ![]() | |||||||||
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Title | Native serotonin transporter in complex with 15B8 Fab antibody in the presence of cocaine | |||||||||
![]() | the sharpened map | |||||||||
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![]() | native membrane protein / serotonin transporter / cocaine / pig brain / MEMBRANE PROTEIN | |||||||||
Function / homology | ![]() serotonin:sodium:chloride symporter activity / presynapse / endosome membrane / focal adhesion / metal ion binding / plasma membrane Similarity search - Function | |||||||||
Biological species | ![]() ![]() ![]() ![]() ![]() ![]() | |||||||||
Method | single particle reconstruction / cryo EM / Resolution: 3.3 Å | |||||||||
![]() | Yang D / Gouaux E | |||||||||
Funding support | ![]()
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![]() | ![]() Title: Native serotonin transporter in complex with 15B8 Fab antibody in the presence of cocaine Authors: Yang D / Gouaux E | |||||||||
History |
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Structure visualization
Supplemental images |
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Downloads & links
-EMDB archive
Map data | ![]() | 230.2 MB | ![]() | |
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Header (meta data) | ![]() ![]() | 19 KB 19 KB | Display Display | ![]() |
Images | ![]() | 121.5 KB | ||
Others | ![]() ![]() ![]() | 121.7 MB 226.4 MB 226.4 MB | ||
Archive directory | ![]() ![]() | HTTPS FTP |
-Validation report
Summary document | ![]() | 830.1 KB | Display | ![]() |
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Full document | ![]() | 829.7 KB | Display | |
Data in XML | ![]() | 15.6 KB | Display | |
Data in CIF | ![]() | 18.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 8de3MC M: atomic model generated by this map C: citing same article ( |
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Similar structure data | Similarity search - Function & homology ![]() |
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Links
EMDB pages | ![]() ![]() |
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Related items in Molecule of the Month |
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Map
File | ![]() | ||||||||||||||||||||
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Annotation | the sharpened map | ||||||||||||||||||||
Voxel size | X=Y=Z: 0.831 Å | ||||||||||||||||||||
Density |
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Symmetry | Space group: 1 | ||||||||||||||||||||
Details | EMDB XML:
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-Supplemental data
-Additional map: the unsharpened map
File | emd_27383_additional_1.map | ||||||||||||
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Annotation | the unsharpened map | ||||||||||||
Projections & Slices |
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Density Histograms |
-Half map: half map A
File | emd_27383_half_map_1.map | ||||||||||||
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Annotation | half map A | ||||||||||||
Projections & Slices |
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Density Histograms |
-Half map: half map B
File | emd_27383_half_map_2.map | ||||||||||||
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Annotation | half map B | ||||||||||||
Projections & Slices |
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Density Histograms |
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Sample components
-Entire : Native serotonin transporter in complex with 15B8 Fab antibody in...
Entire | Name: Native serotonin transporter in complex with 15B8 Fab antibody in the presence of cocaine |
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Components |
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-Supramolecule #1: Native serotonin transporter in complex with 15B8 Fab antibody in...
Supramolecule | Name: Native serotonin transporter in complex with 15B8 Fab antibody in the presence of cocaine type: complex / ID: 1 / Parent: 0 / Macromolecule list: #1-#3 |
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Source (natural) | Organism: ![]() ![]() |
-Macromolecule #1: Transporter
Macromolecule | Name: Transporter / type: protein_or_peptide / ID: 1 / Number of copies: 1 / Enantiomer: LEVO |
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Source (natural) | Organism: ![]() ![]() |
Molecular weight | Theoretical: 60.778879 KDa |
Sequence | String: RETWGKKVDF LLSVIGYAVD LGNVWRFPYI CYQNGGGAFL LPYTIMAIFG GIPLFYMELA LGQYHRNGCI SIWRKICPIF KGIGFAICV IAFYIASYYN TIMAWALYYL ISSFTDQLPW TSCKNSWNTG NCTNYFSEDN VTWMLHSTSP AEEFYTRHVL Q IHRSKGLQ ...String: RETWGKKVDF LLSVIGYAVD LGNVWRFPYI CYQNGGGAFL LPYTIMAIFG GIPLFYMELA LGQYHRNGCI SIWRKICPIF KGIGFAICV IAFYIASYYN TIMAWALYYL ISSFTDQLPW TSCKNSWNTG NCTNYFSEDN VTWMLHSTSP AEEFYTRHVL Q IHRSKGLQ DLGGISWQLA LCIMLIFTII YFSIWKGVKT SGKVVWVTAT FPYIILSILL VRGATLPGAW RGVLFYLKPN WQ KLLETGV WVDAAAQIFF SLGPGFGVLL AFASYNKFNN NCYQDALVTS VVNCMTSFVS GFVIFTVLGY MAEMRNEDVS EVA KDAGPS LLFITYAEAI ANMPASTFFA IIFFLMLITL GLDSTFAGLE GVITAVLDEF PHFWSKRREW LALGVVITCF LGSL ITLTF GGAYVVKLLE EFATGPAVLT VALIEAVAVF WFYGITQFCS DVKEMLGFSP GWFWRICWVA ISPLFLVFII CSFLM SPPQ LWLFQYNYPQ WSIILGYCIG TSSFICIPTY ITYRLIITPG TLKERIVKGI TPETP |
-Macromolecule #2: 15B8 Fab heavy chain variable domain
Macromolecule | Name: 15B8 Fab heavy chain variable domain / type: protein_or_peptide / ID: 2 / Number of copies: 1 / Enantiomer: LEVO |
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Source (natural) | Organism: ![]() ![]() |
Molecular weight | Theoretical: 12.980533 KDa |
Recombinant expression | Organism: ![]() |
Sequence | String: QVQLQQSGPE LVKLGASVRI SCKASGYRFS YSWMNWVKQR PGKGLEWIGR IYPGDGDTKY SGKFKGKATL TADKSSSTVY MQLSSLTSE DSAVYFCARS AYGSEGFAMD YWGQGTSVT |
-Macromolecule #3: 15B8 Fab light chain variable domain
Macromolecule | Name: 15B8 Fab light chain variable domain / type: protein_or_peptide / ID: 3 / Number of copies: 1 / Enantiomer: LEVO |
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Source (natural) | Organism: ![]() ![]() |
Molecular weight | Theoretical: 11.776065 KDa |
Recombinant expression | Organism: ![]() |
Sequence | String: DIVLTQSPAS LAVSLGQRAT ISCRASESVD NYGISFLNWF QQKPGQPPKL LIYAASNQGS GVPARFSGSG SGTYFSLNIH PMEEDDTAV YFCQQTKGVS WTFGGGTKVE I |
-Macromolecule #5: CHLORIDE ION
Macromolecule | Name: CHLORIDE ION / type: ligand / ID: 5 / Number of copies: 1 / Formula: CL |
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Molecular weight | Theoretical: 35.453 Da |
-Macromolecule #6: SODIUM ION
Macromolecule | Name: SODIUM ION / type: ligand / ID: 6 / Number of copies: 2 |
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Molecular weight | Theoretical: 22.99 Da |
-Macromolecule #7: COCAINE
Macromolecule | Name: COCAINE / type: ligand / ID: 7 / Number of copies: 1 / Formula: COC |
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Molecular weight | Theoretical: 303.353 Da |
Chemical component information | ![]() ChemComp-COC: |
-Macromolecule #8: CHOLESTEROL HEMISUCCINATE
Macromolecule | Name: CHOLESTEROL HEMISUCCINATE / type: ligand / ID: 8 / Number of copies: 2 / Formula: Y01 |
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Molecular weight | Theoretical: 486.726 Da |
Chemical component information | ![]() ChemComp-Y01: |
-Macromolecule #9: DODECYL-BETA-D-MALTOSIDE
Macromolecule | Name: DODECYL-BETA-D-MALTOSIDE / type: ligand / ID: 9 / Number of copies: 1 / Formula: LMT |
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Molecular weight | Theoretical: 510.615 Da |
Chemical component information | ![]() ChemComp-LMT: |
-Experimental details
-Structure determination
Method | cryo EM |
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![]() | single particle reconstruction |
Aggregation state | particle |
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Sample preparation
Buffer | pH: 8 |
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Vitrification | Cryogen name: ETHANE |
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Electron microscopy
Microscope | FEI TITAN KRIOS |
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Image recording | Film or detector model: GATAN K3 (6k x 4k) / Average electron dose: 60.0 e/Å2 |
Electron beam | Acceleration voltage: 300 kV / Electron source: ![]() |
Electron optics | Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD / Nominal defocus max: 2.5 µm / Nominal defocus min: 1.0 µm |
Experimental equipment | ![]() Model: Titan Krios / Image courtesy: FEI Company |
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Image processing
Startup model | Type of model: OTHER / Details: Ab initio |
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Final reconstruction | Resolution.type: BY AUTHOR / Resolution: 3.3 Å / Resolution method: FSC 0.143 CUT-OFF / Number images used: 243207 |
Initial angle assignment | Type: MAXIMUM LIKELIHOOD |
Final angle assignment | Type: MAXIMUM LIKELIHOOD |