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Yorodumi- PDB-1bfw: RETRO-INVERSO ANALOGUE OF THE G-H LOOP OF VP1 IN FOOT-AND-MOUTH-D... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1bfw | ||||||
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Title | RETRO-INVERSO ANALOGUE OF THE G-H LOOP OF VP1 IN FOOT-AND-MOUTH-DISEASE (FMD) VIRUS, NMR, 10 STRUCTURES | ||||||
Components | VP1 PROTEIN | ||||||
Keywords | VIRAL PROTEIN / CAPSID / PEPTIDOMIMETIC / RETRO-INVERSO / FMDV / ANTIGEN | ||||||
Method | SOLUTION NMR / TORSION ANGLE DYNAMICS, ANNEALING, MINIMIZATION | ||||||
Authors | Petit, M.C. / Benkirane, N. / Guichard, G. / Phan Chan Du, A. / Cung, M.T. / Briand, J.P. / Muller, S. | ||||||
Citation | Journal: J.Biol.Chem. / Year: 1999 Title: Solution structure of a retro-inverso peptide analogue mimicking the foot-and-mouth disease virus major antigenic site. Structural basis for its antigenic cross-reactivity with the parent peptide. Authors: Petit, M.C. / Benkirane, N. / Guichard, G. / Du, A.P. / Marraud, M. / Cung, M.T. / Briand, J.P. / Muller, S. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1bfw.cif.gz | 55 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1bfw.ent.gz | 44.4 KB | Display | PDB format |
PDBx/mmJSON format | 1bfw.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1bfw_validation.pdf.gz | 319.4 KB | Display | wwPDB validaton report |
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Full document | 1bfw_full_validation.pdf.gz | 365.5 KB | Display | |
Data in XML | 1bfw_validation.xml.gz | 4.9 KB | Display | |
Data in CIF | 1bfw_validation.cif.gz | 6.3 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/bf/1bfw ftp://data.pdbj.org/pub/pdb/validation_reports/bf/1bfw | HTTPS FTP |
-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein/peptide | Mass: 1973.200 Da / Num. of mol.: 1 / Fragment: THE MAJOR IMMUNOGEN REGION, RESIDUES 141-159 Source method: isolated from a genetically manipulated source Details: RETRO-INVERSO PEPTIDE CORRESPONDING TO THE MAJOR IMMUNOGEN REGION OF THE FOOT-AND-MOUTH-DISEASE VIRUS CAPSID |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||
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NMR experiment |
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-Sample preparation
Details | Contents: 90% H2O:10% D2O |
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Sample conditions | Ionic strength: 0.1 M PHOSPHATE / pH: 5.7 / Pressure: 1 atm / Temperature: 285 K |
Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
NMR spectrometer | Type: Bruker DRX400 / Manufacturer: Bruker / Model: DRX400 / Field strength: 400 MHz |
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-Processing
Software |
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NMR software |
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Refinement | Method: TORSION ANGLE DYNAMICS, ANNEALING, MINIMIZATION / Software ordinal: 1 / Details: RESTRAINT ENERGY MINIMIZATION | ||||||||||||
NMR ensemble | Conformer selection criteria: LEAST RESTRAINTS VIOLATIONS, TARGET FUNCTION Conformers calculated total number: 50 / Conformers submitted total number: 10 |