+Open data
-Basic information
Entry | Database: PDB / ID: 1bd1 | ||||||||||||||||||
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Title | CRYSTALLOGRAPHIC STUDY OF ONE TURN OF G/C-RICH B-DNA | ||||||||||||||||||
Components | DNA (5'-D(*Keywords | DNA / B-DNA / DOUBLE HELIX | Function / homology | TRIETHYLAMMONIUM ION / DNA | Function and homology information Method | X-RAY DIFFRACTION / Resolution: 1.6 Å | Authors | Heinemann, U. | Citation | Journal: J.Mol.Biol. / Year: 1989 Title: Crystallographic study of one turn of G/C-rich B-DNA. Authors: Heinemann, U. / Alings, C. #1: Journal: Structure and Methods. DNA and RNA / Year: 1989 Title: Structural Features of G/C-Rich DNA Going A or B Authors: Heinemann, U. / Alings, C. / Lauble, H. #2: Journal: Nucleosides and Nucleotides / Year: 1990 Title: X-Ray Studies of DNA Aiming at Elucidating the Sequence-Structure Code Authors: Heinemann, U. / Alings, C. / Lauble, H. History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1bd1.cif.gz | 17.1 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1bd1.ent.gz | 9.5 KB | Display | PDB format |
PDBx/mmJSON format | 1bd1.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1bd1_validation.pdf.gz | 378.3 KB | Display | wwPDB validaton report |
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Full document | 1bd1_full_validation.pdf.gz | 384.8 KB | Display | |
Data in XML | 1bd1_validation.xml.gz | 4.3 KB | Display | |
Data in CIF | 1bd1_validation.cif.gz | 5.1 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/bd/1bd1 ftp://data.pdbj.org/pub/pdb/validation_reports/bd/1bd1 | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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Components on special symmetry positions |
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-Components
#1: DNA chain | Mass: 3045.992 Da / Num. of mol.: 1 / Source method: obtained synthetically | ||
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#2: Chemical | #3: Water | ChemComp-HOH / | |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.09 Å3/Da / Density % sol: 41.21 % | ||||||||||||||||||||||||
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Crystal grow | Temperature: 277 K / Method: microdialysis / Details: MICRODIALYSIS, temperature 277.00K | ||||||||||||||||||||||||
Components of the solutions |
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-Data collection
Diffraction | Ambient temp details: ROOM TEMPERATURE |
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Diffraction source | Source: SEALED TUBE |
Detector | Detector: DIFFRACTOMETER |
Radiation | Scattering type: x-ray |
Radiation wavelength | Relative weight: 1 |
Reflection | Highest resolution: 1.4 Å / Num. obs: 3062 |
Reflection | *PLUS Highest resolution: 1.4 Å / Lowest resolution: 1.6 Å / Rmerge(I) obs: 0.038 |
-Processing
Software | Name: NUCLSQ / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Refinement | Resolution: 1.6→10 Å / σ(F): 3 /
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Refine Biso |
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Refinement step | Cycle: LAST / Resolution: 1.6→10 Å
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Refine LS restraints |
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Refinement | *PLUS Highest resolution: 1.6 Å / Lowest resolution: 10 Å / σ(F): 3 / Rfactor obs: 0.16 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS |