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- ChemComp-0MK: beta-L-ribopyranose -

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Basic information

EntryDatabase: PDB chemical components / ID: 0MK
NameName: beta-L-ribopyranose / Synonyms: beta-L-ribose; L-ribose; ribose; L-ribopyranose

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Chemical information

Composition
Formula: C5H10O5 / Number of atoms: 20 / Formula weight: 150.13 / Formal charge: 0
Others

4dux

Type: L-saccharide, beta linking / PDB classification: ATOMS / Three letter code: 0MK / Ideal coordinates details: Corina / Model coordinates PDB-ID: 4DUX
History
Create componentMar 1, 2012
Initial releaseMar 20, 2013
Other modificationAug 12, 2019
Other modificationDec 19, 2019
Other modificationJul 3, 2020
Modify nameJul 17, 2020
Modify synonymsJul 17, 2020
Modify atom idJul 17, 2020
Modify component atom idJul 17, 2020
External linksUniChem / ChemSpider / Wikipedia search / Google search

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Details

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SMILES

ACDLabs 12.01C1(O)C(O)C(O)C(CO1)O
CACTVS 3.385O[CH]1CO[CH](O)[CH](O)[CH]1O
OpenEye OEToolkits 1.7.6C1C(C(C(C(O1)O)O)O)O

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SMILES CANONICAL

CACTVS 3.385O[C@H]1CO[C@H](O)[C@@H](O)[C@H]1O
OpenEye OEToolkits 1.7.6C1[C@@H]([C@@H]([C@@H]([C@H](O1)O)O)O)O

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InChI

InChI 1.03InChI=1S/C5H10O5/c6-2-1-10-5(9)4(8)3(2)7/h2-9H,1H2/t2-,3-,4-,5-/m0/s1

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InChIKey

InChI 1.03SRBFZHDQGSBBOR-FCAWWPLPSA-N

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SYSTEMATIC NAME

ACDLabs 12.01beta-L-ribopyranose
OpenEye OEToolkits 1.7.6(2S,3S,4S,5S)-oxane-2,3,4,5-tetrol

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CONDENSED IUPAC CARBOHYDRATE SYMBOL

GMML 1.0LRibpb

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COMMON NAME

GMML 1.0b-L-ribopyranose

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IUPAC CARBOHYDRATE SYMBOL

PDB-CARE 1.0b-L-Ribp

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SNFG CARBOHYDRATE SYMBOL

GMML 1.0Rib

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PDB entries

Showing all 5 items

PDB-3ww1:
X-ray structure of Cellulomonas parahominis L-ribose isomerase with L-ribose

PDB-4dux:
E. coli (lacZ) beta-galactosidase (N460S) in complex with L-ribose

PDB-4q0p:
Crystal structure of Acinetobacter sp. DL28 L-ribose isomerase in complex with L-ribose

PDB-4q0u:
Crystal structure of Acinetobacter sp. DL28 L-ribose isomerase mutant E204Q in complex with L-ribose

PDB-6tsk:
Beta-galactosidase in complex with L-ribose

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