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Structure paper

TitleStructure and inhibition of diaminopimelic acid epimerase by slow-binding alpha-methyl amino acids.
Journal, issue, pagesProtein Sci., Vol. 34, Page e70139-e70139, Year 2025
Publish dateJan 8, 2025 (structure data deposition date)
AuthorsLamer, T. / Chen, P. / Catenza, K. / Perov, I. / L, B. / Hsiao, Y.T. / Van Oers, T.J. / Lemieux, M.J. / Vederas, J.C.
External linksProtein Sci. / PubMed:40299312
MethodsX-ray diffraction
Resolution1.5 - 1.69 Å
Structure data

PDB-9mro:
Crystal structures of a cyanobacterial DAP epimerase bound to either D,L-aziDAP or D,L-alpha-methyl DAP
Method: X-RAY DIFFRACTION / Resolution: 1.59 Å

PDB-9mrp:
Crystal structures of a cyanobacterial DAP epimerase bound to L,L-aziDAP
Method: X-RAY DIFFRACTION / Resolution: 1.5 Å

PDB-9mrv:
Crystal structures of a cyanobacterial DAP epimerase bound to D,L-alpha-methyl DAP
Method: X-RAY DIFFRACTION / Resolution: 1.69 Å

Chemicals

ChemComp-ZDR:
(2R,6S)-2,6-DIAMINO-2-METHYLHEPTANEDIOIC ACID

ChemComp-HOH:
WATER

ChemComp-ZDP:
(2S,6S)-2,6-DIAMINO-2-METHYLHEPTANEDIOIC ACID

Source
  • anabaena sp. ybs01 (bacteria)
KeywordsANTIBIOTIC / DAP epimerase / diaminopimelic acid / DapF / cofactor-independent / protein biochemistry / enzyme mechanism / inhibitor / lysine biosynthesis

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