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Structure paper

TitleThe molecular basis of the binding and specific activation of rhizobial NodD by flavonoids.
Journal, issue, pagesScience, Vol. 391, Page 184-189, Year 2026
Publish dateJun 19, 2024 (structure data deposition date)
AuthorsRuan, Y. / Dong, S. / Jiang, S. / Wang, Y. / Wu, X. / Zhuang, Y. / Wu, W. / East, A.K. / Xu, P. / Poole, P.S. ...Ruan, Y. / Dong, S. / Jiang, S. / Wang, Y. / Wu, X. / Zhuang, Y. / Wu, W. / East, A.K. / Xu, P. / Poole, P.S. / Zhang, Y. / Murray, J.D.
External linksScience / PubMed:41505558
MethodsX-ray diffraction
Resolution2.75 - 3.3 Å
Structure data

PDB-9iib:
Crystal structure of NodD-EBD (Effector Binding Domain) in complex with hesperetin from Rhizobium leguminosarum bv. vicae 3841
Method: X-RAY DIFFRACTION / Resolution: 2.75 Å

PDB-9x6w:
Crystal structure of NodD-EBD (Effector Binding Domain) from Rhizobium leguminosarum bv. vicae 3841
Method: X-RAY DIFFRACTION / Resolution: 3.3 Å

Chemicals

ChemComp-GOL:
GLYCEROL

ChemComp-6JP:
(2S)-5,7-dihydroxy-2-(3-hydroxy-4-methoxyphenyl)-2,3-dihydro-4H-1-benzopyran-4-one

ChemComp-HOH:
WATER

Source
  • rhizobium leguminosarum (bacteria)
KeywordsTRANSCRIPTION / NodD / LysR transcription factors / Flavonoids / Rhizobia

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