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Structure paper

TitleDiverse modulation mechanisms of human Nav1.6 by gating modifier neurotoxins
Journal, issue, pagesTo Be Published
Publish dateSep 8, 2024 (structure data deposition date)
AuthorsFan X / Jian H / Yang L / Chen J / Wang H / Huang X / Geng J / Wu Q / Xie Y / Lu F ...Fan X / Jian H / Yang L / Chen J / Wang H / Huang X / Geng J / Wu Q / Xie Y / Lu F / Guo Q / Shen Z / Jin X / Yan N
External linksSearch PubMed
MethodsEM (single particle)
Resolution2.5 - 2.9 Å
Structure data

46943

9dk5

EMDB-46943, PDB-9dk5:
Cryo-EM structure of human Nav1.6 in complex with PaurTx3
Method: EM (single particle) / Resolution: 2.9 Å

80133

25ih

EMDB-80133, PDB-25ih:
Cryo-EM structure of human Nav1.6 in complex with Cn2
Method: EM (single particle) / Resolution: 2.8 Å

80134

25ii

EMDB-80134, PDB-25ii:
Cryo-EM structure of human Nav1.6 in complex with Iota-Conotoxin RXIA
Method: EM (single particle) / Resolution: 2.5 Å

Chemicals

ChemComp-NAG:
2-acetamido-2-deoxy-beta-D-glucopyranose

ChemComp-9Z9:
(3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en / detergent*YM

ChemComp-PCW:
1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE / DOPC, phospholipid*YM

ChemComp-Y01:
CHOLESTEROL HEMISUCCINATE

ChemComp-CLR:
CHOLESTEROL

ChemComp-P5S:
O-[(R)-{[(2R)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine

ChemComp-LPE:
1-O-OCTADECYL-SN-GLYCERO-3-PHOSPHOCHOLINE

ChemComp-P3X:
(5E,17R,20S)-23-amino-20-hydroxy-14,20-dioxo-15,19,21-trioxa-20lambda~5~-phosphatricos-5-en-17-yl hexadecanoate

ChemComp-PT5:
[(2R)-1-octadecanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phospho / phospholipid*YM

ChemComp-HOH:
WATER

ChemComp-NA:
Unknown entry

Source
  • homo sapiens (human)
  • paraphysa scrofa (spider)
  • centruroides noxius (Mexican scorpion)
  • conus radiatus (invertebrata)
KeywordsMEMBRANE PROTEIN / Nav1.6 / voltage gated sodium channel / cryo-EM / toxin / Cn2 / TRANSPORT PROTEIN-TOXIN complex / Iota-Conotoxin RXIA / TRANSPORT PROTEIN/TOXIN / PaurTx3

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