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TitleAnti-immune complex antibodies are elicited during repeated immunization with HIV Env immunogens.
Journal, issue, pagesSci Immunol, Vol. 10, Issue 103, Page eadp5218, Year 2025
Publish dateJan 17, 2025
AuthorsSharidan Brown / Aleksandar Antanasijevic / Leigh M Sewall / Daniel Montiel Garcia / Philip J M Brouwer / Rogier W Sanders / Andrew B Ward /
PubMed AbstractVaccination strategies against HIV-1 aim to elicit broadly neutralizing antibodies (bnAbs) using prime-boost regimens with HIV envelope (Env) immunogens. Epitope mapping has shown that early antibody ...Vaccination strategies against HIV-1 aim to elicit broadly neutralizing antibodies (bnAbs) using prime-boost regimens with HIV envelope (Env) immunogens. Epitope mapping has shown that early antibody responses are directed to easily accessible nonneutralizing epitopes on Env instead of bnAb epitopes. Autologously neutralizing antibody responses appear upon boosting, once immunodominant epitopes are saturated. Here, we use electron microscopy-based polyclonal epitope mapping (EMPEM) to elucidate how repeated immunization with HIV Env SOSIP immunogens results in the generation of Ab2α anti-idiotypic antibodies in rabbits and rhesus macaques. We present the structures of six anti-immune complex antibodies and find that they target idiotopes composed of framework regions of antibodies bound to Env. Examination of cryo-electron microscopy density enabled prediction of sequences for an anti-immune complex antibody, the paratope of which is enriched with aromatic amino acids. This work sheds light on current vaccine development efforts for HIV, as well as for other pathogens in which repeated exposure to antigen is required.
External linksSci Immunol / PubMed:39823319
MethodsEM (single particle)
Resolution3.3 - 25.0 Å
Structure data

EMDB-43838, PDB-9atz:
HIV 16055.v8.3 SOSIP Env in Complex with V2 Epitope and Anti-Immune Complex pAbs from Rabbit 2464
Method: EM (single particle) / Resolution: 3.4 Å

EMDB-43894: HIV-1 B41 SOSIP.v4.1 Env in Complex with N241 Epitope and Anti-Immune Complex Antibodies
Method: EM (single particle) / Resolution: 5.8 Å

EMDB-43895: nsEM of HIV-1 16055 SOSIP.v8.3 Env in Complex with Week 6 Base pAb (Rabbit ID: 2464)
Method: EM (single particle) / Resolution: 25.0 Å

EMDB-43896: nsEM of HIV-1 16055 SOSIP.v8.3 Env in Complex with Week 22 N611, V2, and Base Epitope pAbs (Rabbit ID: 2464)
Method: EM (single particle) / Resolution: 23.0 Å

EMDB-43935, PDB-9axd:
HIV BG505.v5.2 (N289/N241) SOSIP Env in Complex with gp120-Interface pAb from Rh.33203
Method: EM (single particle) / Resolution: 3.8 Å

EMDB-43967, PDB-9axi:
HIV 16055.v8.3 SOSIP Env in Complex with Base and N625 Epitope pAbs from Rabbit 2463
Method: EM (single particle) / Resolution: 3.3 Å

EMDB-43968, PDB-9axk:
HIV 16055.v8.3 SOSIP Env in Complex with Base and N611 Epitope pAbs from Rabbit 2463
Method: EM (single particle) / Resolution: 3.8 Å

EMDB-43981, PDB-9ay6:
HIV BG505.v5.2 (N289/N241) SOSIP Env in Complex with V5 pAb from Rh.33203
Method: EM (single particle) / Resolution: 4.0 Å

EMDB-43998, PDB-9ays:
HIV BG505.v5.2 (N289/N241) SOSIP Env in Complex with V5, gp120-Interface, and Anti-Immune Complex pAbs from Rh.33203
Method: EM (single particle) / Resolution: 4.6 Å

EMDB-43999, PDB-9ayv:
HIV CH505/BG505 SOSIP.v8.1 Env in Complex with V1/V3 Epitope and Anti-Immune Complex pAbs from Rabbit 2474
Method: EM (single particle) / Resolution: 4.4 Å

EMDB-44076: nsEM of HIV-1 BG505 SOSIP.v5.2 (N289/N241) Env in Complex with Week 38 gp120-Interface, N289, C3/V5, Base, and Anti-Immune Complex Epitope pAbs (NHP ID: Rh33203)
Method: EM (single particle) / Resolution: 25.0 Å

Chemicals

ChemComp-NAG:
2-acetamido-2-deoxy-beta-D-glucopyranose

ChemComp-MAN:
alpha-D-mannopyranose

Source
  • oryctolagus cuniculus (rabbit)
  • human immunodeficiency virus 1
  • macaca mulatta (Rhesus monkey)
KeywordsVIRAL PROTEIN / HIV / Polyclonal / Antibodies / CryoEMPEM / Rabbit / Anti-Immune Complex / V1/V3 / NHP / Macaque / gp120-Interface / EMPEM / Polyclonal Antibodies / N625 / Base / SOSIP / N611 / V5

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