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Structure paper

TitleStructural basis of water-mediated cis Watson-Crick/Hoogsteen base-pair formation in non-CpG methylation.
Journal, issue, pagesNucleic Acids Res., Vol. 52, Page 8566-8579, Year 2024
Publish dateOct 5, 2023 (structure data deposition date)
AuthorsLin, S.M. / Huang, H.T. / Fang, P.J. / Chang, C.F. / Satange, R. / Chang, C.K. / Chou, S.H. / Neidle, S. / Hou, M.H.
External linksNucleic Acids Res. / PubMed:38989613
MethodsX-ray diffraction
Resolution1.64 - 2.48 Å
Structure data

PDB-8wnb:
Crystal structure of d(ACGCCGT/ACGICGT)
Method: X-RAY DIFFRACTION / Resolution: 2.48 Å

PDB-8xp8:
Crystal structure of d(ACGmCCGT/ACGGCGT) in complex with Echinomycin
Method: X-RAY DIFFRACTION / Resolution: 1.64 Å

PDB-8xp9:
Crystal structure of d(ACGCCGT/ACGGCGT)
Method: X-RAY DIFFRACTION / Resolution: 2.34 Å

PDB-8xpa:
Crystal structure of d(ACGmCCGT/ACGGCGT)
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-8xpb:
Crystal structure of d(ACGCCGT/ACGGCGT) in complex with Echinomycin
Method: X-RAY DIFFRACTION / Resolution: 2 Å

Chemicals

ChemComp-HOH:
WATER

ChemComp-MN:
Unknown entry

ChemComp-QUI:
2-CARBOXYQUINOXALINE

ChemComp-MG:
Unknown entry

Source
  • synthetic construct (others)
  • streptomyces echinatus. (bacteria)
KeywordsDNA / naked DNA duplex / DNA/ANTIBIOTIC / DNA-ligand Complex / Antibiotic / DNA-ANTIBIOTIC complex / complex

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