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Structure paper

TitleMechanistic Insights into Substrate Recognition of Human Nucleoside Diphosphate Kinase C Based on Nucleotide-Induced Structural Changes
Journal, issue, pagesInt J Mol Sci, Vol. 25, Year 2024
Publish dateOct 18, 2023 (structure data deposition date)
AuthorsAmjadi, R. / Werten, S. / Lomada, S.K. / Baldin, C. / Scheffzek, K. / Dunzendorfer-Matt, T. / Wieland, T.
External linksInt J Mol Sci / Search PubMed
MethodsX-ray diffraction
Resolution1.255 - 2.64 Å
Structure data

PDB-8qvy:
Human NDPK-C unliganded
Method: X-RAY DIFFRACTION / Resolution: 2.64 Å

PDB-8qvz:
Human NDPK-C in complex with cAMP
Method: X-RAY DIFFRACTION / Resolution: 1.774 Å

PDB-8qw0:
Human NDPK-C in complex with GDP
Method: X-RAY DIFFRACTION / Resolution: 2.175 Å

PDB-8qw1:
Human NDPK-C in complex with ADP and Mg2+
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-8qw2:
Human NDPK-C in complex with UDP and Mg2+
Method: X-RAY DIFFRACTION / Resolution: 1.87 Å

PDB-8qw3:
Human NDPK-C in complex with ADP
Method: X-RAY DIFFRACTION / Resolution: 1.255 Å

Chemicals

ChemComp-PO4:
PHOSPHATE ION

ChemComp-CMP:
ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE

ChemComp-SO4:
SULFATE ION

ChemComp-HOH:
WATER

ChemComp-GDP:
GUANOSINE-5'-DIPHOSPHATE / GDP, energy-carrying molecule*YM

ChemComp-ADP:
ADENOSINE-5'-DIPHOSPHATE / ADP, energy-carrying molecule*YM

ChemComp-MG:
Unknown entry

ChemComp-UDP:
URIDINE-5'-DIPHOSPHATE / UDP*YM

Source
  • homo sapiens (human)
KeywordsTRANSFERASE / Kinase

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