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TitleStructural analysis of peroxide-soaked DNA crystals containing ordered copper binding sites: towards understanding oxidative damage at the atomic scale
Journal, issue, pagesTo Be Published
Publish dateMar 10, 2023 (structure data deposition date)
AuthorsLambert, M.C. / Hall, J.P.
External linksSearch PubMed
MethodsX-ray diffraction
Resolution1.04 - 2.1 Å
Structure data

PDB-8oe7:
Crystal structure of the Z-DNA duplex d(CGCGCG) containing ordered copper(II) and soaked in hydrogen peroxide for 5 minutes
Method: X-RAY DIFFRACTION / Resolution: 1.25 Å

PDB-8oe8:
Crystal structure of the Z-DNA duplex d(CGCGCG) containing ordered copper(II) and soaked in hydrogen peroxide for an hour
Method: X-RAY DIFFRACTION / Resolution: 1.3 Å

PDB-8oe9:
Crystal structure of the Z-DNA duplex d(CGCGCG) soaked in copper(II) chloride and hydrogen peroxide
Method: X-RAY DIFFRACTION / Resolution: 1.04 Å

PDB-8oea:
Crystal structure of the Z-DNA duplex d(CGCGCG) soaked in copper(II) chloride, in preparation to hydrogen peroxide soaking, first collection at room temperature
Method: X-RAY DIFFRACTION / Resolution: 1.5 Å

PDB-8oeb:
Crystal structure of the Z-DNA duplex d(CGCGCG) containing ordered copper(II) and soaked in hydrogen peroxide for 30 minutes, second collection at room temperature
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-8oec:
Crystal structure of the Z-DNA duplex d(CGCGCG) containing ordered copper(II) and soaked in hydrogen peroxide for another 30 minutes, third collection at room temperature
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-8oex:
Crystal structure of the native Z-DNA duplex d(CGCGCG) before soaking of CuCl2
Method: X-RAY DIFFRACTION / Resolution: 1.07 Å

Chemicals

ChemComp-CU:
COPPER (II) ION

ChemComp-PEO:
HYDROGEN PEROXIDE

ChemComp-HOH:
WATER

ChemComp-SPM:
SPERMINE

Source
  • synthetic construct (others)
KeywordsDNA

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