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Structure paper

TitleComparative functional and structural analysis of Pseudomonas aeruginosa d-alanine-d-alanine ligase isoforms as prospective antibiotic targets.
Journal, issue, pagesFebs J., Vol. 290, Page 5536-5553, Year 2023
Publish dateOct 21, 2022 (structure data deposition date)
AuthorsPederick, J.L. / Woolman, J.C. / Bruning, J.B.
External linksFebs J. / PubMed:37581574
MethodsX-ray diffraction
Resolution1.22 - 2.45 Å
Structure data

PDB-8evv:
Apo form of DdlA from Pseudomonas aeruginosa PAO1
Method: X-RAY DIFFRACTION / Resolution: 2.05 Å

PDB-8evw:
DdlA from Pseudomonas aeruginosa PAO1 in complex with ATP and D-ala-D-ala
Method: X-RAY DIFFRACTION / Resolution: 1.22 Å

PDB-8evx:
DdlA from Pseudomonas aeruginosa PAO1 in complex with ADP and phosphorylated D-cycloserine
Method: X-RAY DIFFRACTION / Resolution: 1.55 Å

PDB-8evy:
DdlB from Pseudomonas aeruginosa PAO1 in complex with ATP and D-ala-D-ala
Method: X-RAY DIFFRACTION / Resolution: 2.35 Å

PDB-8evz:
DdlB from Pseudomonas aeruginosa PAO1 in complex with ADP and phosphorylated D-cycloserine
Method: X-RAY DIFFRACTION / Resolution: 2.45 Å

Chemicals

ChemComp-HOH:
WATER

ChemComp-ATP:
ADENOSINE-5'-TRIPHOSPHATE / ATP, energy-carrying molecule*YM

ChemComp-DAL:
D-ALANINE

ChemComp-MG:
Unknown entry

ChemComp-ADP:
ADENOSINE-5'-DIPHOSPHATE / ADP, energy-carrying molecule*YM

ChemComp-DS0:
[(4R)-4-azanyl-4,5-dihydro-1,2-oxazol-3-yl] dihydrogen phosphate

ChemComp-K:
Unknown entry

ChemComp-NA:
Unknown entry

Source
  • pseudomonas aeruginosa (bacteria)
KeywordsLIGASE / ATP-grasp / LIGASE/PRODUCT / LIGASE-PRODUCT complex / LIGASE/INHIBITOR / LIGASE-INHIBITOR complex

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