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Structure paper

TitleCrystallographic cyanide-probing for cytochrome c oxidase reveals structural bases suggesting that a putative proton transfer H-pathway pumps protons.
Journal, issue, pagesJ. Biol. Chem., Vol. 299, Page 105277-105277, Year 2023
Publish dateNov 4, 2021 (structure data deposition date)
AuthorsShimada, A. / Baba, J. / Nagao, S. / Shinzawa-Itoh, K. / Yamashita, E. / Muramoto, K. / Tsukihara, T. / Yoshikawa, S.
External linksJ. Biol. Chem. / PubMed:37742916
MethodsX-ray diffraction
Resolution1.45 - 1.65 Å
Structure data

PDB-7vuw:
Bovine heart cytochrome c oxidase in the cyanide-bound fully oxidized state at 50 K
Method: X-RAY DIFFRACTION / Resolution: 1.6 Å

PDB-7vvr:
Bovine cytochrome c oxidese in CN-bound mixed valence state at 50 K
Method: X-RAY DIFFRACTION / Resolution: 1.65 Å

PDB-7w3e:
Bovine cytochrome c oxidese in CN-bound fully reduced state at 50 K
Method: X-RAY DIFFRACTION / Resolution: 1.45 Å

Chemicals

ChemComp-HEA:
HEME-A

ChemComp-CU:
COPPER (II) ION

ChemComp-MG:
Unknown entry

ChemComp-NA:
Unknown entry

ChemComp-CYN:
CYANIDE ION

ChemComp-PGV:
(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE / phospholipid*YM

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-TGL:
TRISTEAROYLGLYCEROL

ChemComp-CUA:
DINUCLEAR COPPER ION

ChemComp-PSC:
(7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE / phospholipid*YM

ChemComp-CHD:
CHOLIC ACID

ChemComp-PEK:
(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE / phospholipid*YM

ChemComp-CDL:
CARDIOLIPIN / phospholipid*YM

ChemComp-DMU:
DECYL-BETA-D-MALTOPYRANOSIDE / detergent*YM

ChemComp-ZN:
Unknown entry

ChemComp-PO4:
PHOSPHATE ION

ChemComp-HOH:
WATER

Source
  • bos taurus (cattle)
KeywordsOXIDOREDUCTASE / Cytochrome c oxidase Membrane protein Respiratory complex Heme protein / cytochrome c oxidase / membrane protein / protein complex / respiratory complex / heme protein / Cytochrome c oxidese / Respiratory enzyme / Mitochondrial protein

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