[English] 日本語
Yorodumi Papers
- Database of articles cited by EMDB/PDB/SASBDB data -

+
Search query

Keywords
Structure methods
Author
Journal
IF

-
Structure paper

TitleConformational changes and CO-induced channel gating in connexin26.
Journal, issue, pagesStructure, Vol. 30, Issue 5, Page 697-706.e4, Year 2022
Publish dateMay 5, 2022
AuthorsDeborah H Brotherton / Christos G Savva / Timothy J Ragan / Nicholas Dale / Alexander D Cameron /
PubMed AbstractConnexins form large-pore channels that function either as dodecameric gap junctions or hexameric hemichannels to allow the regulated movement of small molecules and ions across cell membranes. ...Connexins form large-pore channels that function either as dodecameric gap junctions or hexameric hemichannels to allow the regulated movement of small molecules and ions across cell membranes. Opening or closing of the channels is controlled by a variety of stimuli, and dysregulation leads to multiple diseases. An increase in the partial pressure of carbon dioxide (PCO) has been shown to cause connexin26 (Cx26) gap junctions to close. Here, we use cryoelectron microscopy (cryo-EM) to determine the structure of human Cx26 gap junctions under increasing levels of PCO. We show a correlation between the level of PCO and the size of the aperture of the pore, governed by the N-terminal helices that line the pore. This indicates that CO alone is sufficient to cause conformational changes in the protein. Analysis of the conformational states shows that movements at the N terminus are linked to both subunit rotation and flexing of the transmembrane helices.
External linksStructure / PubMed:35276081 / PubMed Central
MethodsEM (single particle)
Resolution1.9 - 2.9 Å
Structure data

EMDB-13935, PDB-7qeo:
human Connexin 26 at 55mm Hg PCO2, pH7.4: two masked subunits, class C
Method: EM (single particle) / Resolution: 2.9 Å

EMDB-13937, PDB-7qeq:
human Connexin 26 dodecamer at 90mmHg PCO2, pH7.4
Method: EM (single particle) / Resolution: 1.9 Å

EMDB-13938, PDB-7qer:
human Connexin 26 dodecamer at 55mm Hg PCO2, pH7.4
Method: EM (single particle) / Resolution: 2.2 Å

EMDB-13939, PDB-7qes:
human Connexin 26 at 55mm Hg PCO2, pH7.4: two masked subunits, class A
Method: EM (single particle) / Resolution: 2.6 Å

EMDB-13940, PDB-7qet:
human Connexin 26 dodecamer at 20mmHg PCO2, pH7.4
Method: EM (single particle) / Resolution: 2.1 Å

EMDB-13941, PDB-7qeu:
human Connexin 26 at 55mmHg PCO2, pH7.4: two masked subunits, class B
Method: EM (single particle) / Resolution: 2.7 Å

EMDB-13942, PDB-7qev:
human Connexin 26 at 55mm Hg PCO2, pH7.4:two masked subunits, class D
Method: EM (single particle) / Resolution: 2.9 Å

EMDB-13943, PDB-7qew:
human Connexin 26 class 2 hexamer at 90mmHg PCO2, pH7.4
Method: EM (single particle) / Resolution: 2.1 Å

EMDB-13944, PDB-7qey:
human Connexin 26 class 1 hexamer at 90mmHg PCO2, pH7.4
Method: EM (single particle) / Resolution: 2.0 Å

Chemicals

ChemComp-LMT:
DODECYL-BETA-D-MALTOSIDE / detergent*YM

ChemComp-PTY:
PHOSPHATIDYLETHANOLAMINE / phospholipid*YM / Phosphatidylethanolamine

ChemComp-HOH:
WATER / Water

Source
  • homo sapiens (human)
KeywordsMEMBRANE PROTEIN / Gap junction / Ion Channel / carbon dioxide sensitive

+
About Yorodumi Papers

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)

EMDB accession codes are about to change! (news from PDBe EMDB page)

  • The allocation of 4 digits for EMDB accession codes will soon come to an end. Whilst these codes will remain in use, new EMDB accession codes will include an additional digit and will expand incrementally as the available range of codes is exhausted. The current 4-digit format prefixed with “EMD-” (i.e. EMD-XXXX) will advance to a 5-digit format (i.e. EMD-XXXXX), and so on. It is currently estimated that the 4-digit codes will be depleted around Spring 2019, at which point the 5-digit format will come into force.
  • The EM Navigator/Yorodumi systems omit the EMD- prefix.

Related info.:Q: What is EMD? / ID/Accession-code notation in Yorodumi/EM Navigator

External links:EMDB Accession Codes are Changing Soon! / Contact to PDBj

+
Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary.
  • This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software).
  • Now, EM Navigator and Yorodumi are based on the updated data.

External links:wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

-
Yorodumi Papers

Database of articles cited by EMDB/PDB/SASBDB data

  • Database of articles cited by EMDB, PDB, and SASBDB entries
  • Using PubMed data

Related info.:EMDB / PDB / SASBDB / Yorodumi / EMN Papers / Changes in new EM Navigator and Yorodumi

Read more