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Structure paper

TitleHigh-resolution structures of the bound effectors avadomide (CC-122) and iberdomide (CC-220) highlight advantages and limitations of the MsCI4 soaking system.
Journal, issue, pagesActa Crystallogr D Struct Biol, Vol. 78, Page 290-298, Year 2022
Publish dateSep 22, 2021 (structure data deposition date)
AuthorsHeim, C. / Hartmann, M.D.
External linksActa Crystallogr D Struct Biol / PubMed:35234143
MethodsX-ray diffraction
Resolution1.52 - 1.8 Å
Structure data

PDB-7ps9:
Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with Iberdomide (CC-220)
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-7pso:
Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with Avadomide (CC-122)
Method: X-RAY DIFFRACTION / Resolution: 1.52 Å

Chemicals

ChemComp-ZN:
Unknown entry

ChemComp-8W7:
(3S)-3-[4-({4-[(morpholin-4-yl)methyl]phenyl}methoxy)-1-oxo-1,3-dihydro-2H-isoindol-2-yl]piperidine-2,6-dione

ChemComp-HOH:
WATER

ChemComp-EF2:
S-Thalidomide / medication*YM

ChemComp-PO4:
PHOSPHATE ION

ChemComp-835:
(3S)-3-(5-azanyl-2-methyl-4-oxidanylidene-quinazolin-3-yl)piperidine-2,6-dione

Source
  • magnetospirillum gryphiswaldense (magnetotactic)
KeywordsSIGNALING PROTEIN / PROTEIN DEGRADATION / Immunomodulatory imide drug / E3 LIGASE / UBIQUITIN LIGASE

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