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TitleIdentification of fragments binding to SARS-CoV-2 nsp10 reveals ligand-binding sites in conserved interfaces between nsp10 and nsp14/nsp16.
Journal, issue, pagesRsc Chem Biol, Vol. 3, Page 44-55, Year 2022
Publish dateJun 6, 2021 (structure data deposition date)
AuthorsKozielski, F. / Sele, C. / Talibov, V.O. / Lou, J. / Dong, D. / Wang, Q. / Shi, X. / Nyblom, M. / Rogstam, A. / Krojer, T. ...Kozielski, F. / Sele, C. / Talibov, V.O. / Lou, J. / Dong, D. / Wang, Q. / Shi, X. / Nyblom, M. / Rogstam, A. / Krojer, T. / Fisher, Z. / Knecht, W.
External linksRsc Chem Biol / PubMed:35128408
MethodsX-ray diffraction
Resolution1.67 - 1.95 Å
Structure data

PDB-7orr:
Non-structural protein 10 (nsp10) from SARS CoV-2 in complex with fragment VT00022
Method: X-RAY DIFFRACTION / Resolution: 1.79 Å

PDB-7oru:
Non-structural protein 10 (nsp10) from SARS CoV-2 in complex with fragment VT00221
Method: X-RAY DIFFRACTION / Resolution: 1.67 Å

PDB-7orv:
Non-structural protein 10 (nsp10) from SARS CoV-2 in complex with fragment VT00239
Method: X-RAY DIFFRACTION / Resolution: 1.95 Å

PDB-7orw:
Non-structural protein 10 (nsp10) from SARS CoV-2 in complex with fragment VT00265
Method: X-RAY DIFFRACTION / Resolution: 1.95 Å

Chemicals

ChemComp-ZN:
Unknown entry

ChemComp-DMS:
DIMETHYL SULFOXIDE / DMSO, precipitant*YM

ChemComp-PIM:
4-PHENYL-1H-IMIDAZOLE

ChemComp-GOL:
GLYCEROL

ChemComp-CL:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-2AQ:
QUINOLIN-2-AMINE

ChemComp-X4V:
N~4~,N~4~-dimethylpyridine-2,4-diamine

ChemComp-7WA:
1H-benzimidazol-4-amine

Source
  • severe acute respiratory syndrome coronavirus 2
KeywordsVIRAL PROTEIN / Fragment / complex / small molecule

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