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Structure paper

TitleCatalytic mechanism for Renilla-type luciferases
Journal, issue, pagesNat Catal, Year 2023
Publish dateMay 21, 2021 (structure data deposition date)
AuthorsSchenkmayerova, A. / Toul, M. / Pluskal, D. / Baatallah, R. / Gagnot, G. / Pinto, G.P. / Santana, V.T. / Stuchla, M. / Neugebauer, P. / Chaiyen, P. ...Schenkmayerova, A. / Toul, M. / Pluskal, D. / Baatallah, R. / Gagnot, G. / Pinto, G.P. / Santana, V.T. / Stuchla, M. / Neugebauer, P. / Chaiyen, P. / Damborsky, J. / Bednar, D. / Janin, Y.L. / Prokop, Z. / Marek, M.
External linksNat Catal / Search PubMed
MethodsX-ray diffraction
Resolution1.451 - 2.251 Å
Structure data

PDB-7omd:
Crystal structure of azacoelenterazine-bound Renilla reniformis luciferase variant RLuc8-D162A
Method: X-RAY DIFFRACTION / Resolution: 1.601 Å

PDB-7omo:
Crystal structure of coelenteramine-bound Renilla reniformis luciferase RLuc8-D120A variant
Method: X-RAY DIFFRACTION / Resolution: 1.451 Å

PDB-7omr:
Crystal structure of coelenteramide-bound Renilla reniformis luciferase RLuc8-D162A variant
Method: X-RAY DIFFRACTION / Resolution: 1.5 Å

PDB-7qxq:
Coelenteramide-bound Renilla-type luciferase (AncFT)
Method: X-RAY DIFFRACTION / Resolution: 2.251 Å

PDB-7qxr:
Azacoelenterazine-bound Renilla-type luciferase (AncFT)
Method: X-RAY DIFFRACTION / Resolution: 2.052 Å

Chemicals

ChemComp-VK8:
6-(4-hydroxyphenyl)-2-[(4-hydroxyphenyl)methyl]-8-(phenylmethyl)-[1,2,4]triazolo[4,3-a]pyrazin-3-one

ChemComp-DMS:
DIMETHYL SULFOXIDE / DMSO, precipitant*YM

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-CL:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-VKB:
4-[5-azanyl-6-(phenylmethyl)pyrazin-2-yl]phenol

ChemComp-MG:
Unknown entry

ChemComp-GOL:
GLYCEROL

ChemComp-CEI:
N-[3-BENZYL-5-(4-HYDROXYPHENYL)PYRAZIN-2-YL]-2-(4-HYDROXYPHENYL)ACETAMIDE

ChemComp-NSW:
3-(4-hydroxyphenyl)-8-[(4-hydroxyphenyl)methyl]-5-(phenylmethyl)-1$l^{4},4,7,8-tetrazabicyclo[4.3.0]nona-1(6),2,4-trien-9-one

Source
  • renilla reniformis (sea pansy)
  • synthetic construct (others)
KeywordsLUMINESCENT PROTEIN / bioluminscence / coelenteramide-bound enzyme / OXIDOREDUCTASE / luciferase / coelenteramide / Renilla-like / engineered ancestor / azacoelenterazine / substrate analogue

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