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Structure paper

TitleRational design of a hydrolysis-resistant mycobacterial phosphoglycolipid antigen presented by CD1c to T cells.
Journal, issue, pagesJ. Biol. Chem., Vol. 297, Page 101197-101197, Year 2021
Publish dateMay 18, 2021 (structure data deposition date)
AuthorsReijneveld, J.F. / Marino, L. / Cao, T.P. / Cheng, T.Y. / Dam, D. / Shahine, A. / Witte, M.D. / Filippov, D.V. / Suliman, S. / van der Marel, G.A. ...Reijneveld, J.F. / Marino, L. / Cao, T.P. / Cheng, T.Y. / Dam, D. / Shahine, A. / Witte, M.D. / Filippov, D.V. / Suliman, S. / van der Marel, G.A. / Moody, D.B. / Minnaard, A.J. / Rossjohn, J. / Codee, J.D.C. / Van Rhijn, I.
External linksJ. Biol. Chem. / PubMed:34536421
MethodsX-ray diffraction
Resolution1.73 - 2.11 Å
Structure data

PDB-7mx4:
CD1c with antigen analogue 1
Method: X-RAY DIFFRACTION / Resolution: 1.73 Å

PDB-7mxf:
CD1c with antigen analogue 2
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-7mxh:
CD1c with antigen analogue 3
Method: X-RAY DIFFRACTION / Resolution: 2.11 Å

Chemicals

ChemComp-NAG:
2-acetamido-2-deoxy-beta-D-glucopyranose

ChemComp-ZPD:
(4S,8R,12S,16S,20S)-4,8,12,16,20-pentamethylheptacosyl (1R,2S,3S,4R,5R)-2,3,4-trihydroxy-5-(hydroxymethyl)cyclohexyl hydrogen (R)-phosphate

ChemComp-D12:
DODECANE

ChemComp-ZP7:
(2S)-2,3-dihydroxypropyl hexadecanoate

ChemComp-NHE:
2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID / pH buffer*YM

ChemComp-MLA:
MALONIC ACID

ChemComp-HOH:
WATER

ChemComp-ZQ4:
2,6-anhydro-1-deoxy-1-[(S)-hydroxy{[(4R,8S,12R,16R,20S)-4,8,12,16,20-pentamethylheptacosyl]oxy}phosphoryl]-D-glycero-D-galacto-heptitol

ChemComp-ZQ7:
2,6-anhydro-1-deoxy-1,1-difluoro-1-[(R)-hydroxy{[(4S,8S,12S,16S,20S)-4,8,12,16,20-pentamethylheptacosyl]oxy}phosphoryl]-D-glycero-D-galacto-heptitol

Source
  • homo sapiens (human)
KeywordsLIPID BINDING PROTEIN / IMMUNE SYSTEM / lipid / CD1c / antigen-presenting / tuberculosis

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