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Structure paper

TitleInhibition of the Clostridioides difficile Class D beta-Lactamase CDD-1 by Avibactam.
Journal, issue, pagesAcs Infect Dis., Vol. 7, Page 1164-1176, Year 2021
Publish dateOct 11, 2020 (structure data deposition date)
AuthorsStewart, N.K. / Toth, M. / Stasyuk, A. / Lee, M. / Smith, C.A. / Vakulenko, S.B.
External linksAcs Infect Dis. / PubMed:33390002
MethodsX-ray diffraction
Resolution1.92 - 2 Å
Structure data

PDB-7kep:
avibactam-CDD-1 2 minute complex
Method: X-RAY DIFFRACTION / Resolution: 1.92 Å

PDB-7keq:
avibactam-CDD-1 6 minute complex
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-7ker:
avibactam-CDD-1 45 minute complex
Method: X-RAY DIFFRACTION / Resolution: 1.93 Å

Chemicals

ChemComp-NXL:
(2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide / antibiotic, inhibitor*YM

ChemComp-FYG:
(2S,5R)-7-oxo-6-(sulfooxy)-1,6-diazabicyclo[3.2.1]octane-2-carboxamide / antibiotic, inhibitor*YM

ChemComp-SO4:
SULFATE ION

ChemComp-MPD:
(4S)-2-METHYL-2,4-PENTANEDIOL / precipitant*YM

ChemComp-HOH:
WATER

ChemComp-EPE:
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID / pH buffer*YM

Source
  • clostridioides difficile (bacteria)
KeywordsHYDROLASE/INHIBITOR / antibiotic resistance / mutant / Gram-positive / inhibitor / HYDROLASE / HYDROLASE-INHIBITOR complex

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