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Structure paper

TitleMolecular insights into the endoperoxide formation by Fe(II)/ alpha-KG-dependent oxygenase NvfI.
Journal, issue, pagesNat Commun, Vol. 12, Page 4417-4417, Year 2021
Publish dateNov 1, 2020 (structure data deposition date)
AuthorsMori, T. / Zhai, R. / Ushimaru, R. / Matsuda, Y. / Abe, I.
External linksNat Commun / PubMed:34285212
MethodsX-ray diffraction
Resolution1.9 - 2.3 Å
Structure data

PDB-7de2:
iron and alpha-ketoglutarate-dependent endoperoxidase NvfI
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

PDB-7emz:
iron and alpha-ketoglutarate-dependent endoperoxidase NvfI W199F variant
Method: X-RAY DIFFRACTION / Resolution: 2.3 Å

PDB-7enb:
iron and alpha-ketoglutarate-dependent endoperoxidase NvfI with different conformation
Method: X-RAY DIFFRACTION / Resolution: 2.3 Å

Chemicals

ChemComp-AKG:
2-OXOGLUTARIC ACID

ChemComp-H3X:
methyl (3'~{a}~{R},4'~{S},5'~{S},5~{a}~{S},6~{S},7~{S},9~{a}~{R})-1,1,3'~{a},4',5~{a},7,7'-heptamethyl-3,6'-bis(oxidanylidene)spiro[4,5,7,8,9,9~{a}-hexahydrobenzo[c]oxepine-6,2'-4,5-dihydro-3~{H}-1-benzofuran]-5'-carboxylate

ChemComp-FE:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-OGA:
N-OXALYLGLYCINE / inhibitor*YM

Source
  • aspergillus novofumigatus ibt 16806 (mold)
KeywordsOXIDOREDUCTASE / Novofumigatonin / endoperoxidase / iron and alpha-ketoglutarate-dependent enzyme

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