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Structure paper

TitleCrystal structures of aconitase X enzymes from bacteria and archaea provide insights into the molecular evolution of the aconitase superfamily.
Journal, issue, pagesCommun Biol, Vol. 4, Page 687-687, Year 2021
Publish dateAug 3, 2020 (structure data deposition date)
AuthorsWatanabe, S. / Murase, Y. / Watanabe, Y. / Sakurai, Y. / Tajima, K.
External linksCommun Biol / PubMed:34099860
MethodsX-ray diffraction
Resolution1.6 - 3.39 Å
Structure data

PDB-7cnp:
Crystal structure of Agrobacterium tumefaciens aconitase X (apo-form)
Method: X-RAY DIFFRACTION / Resolution: 1.6 Å

PDB-7cnq:
Crystal structure of Agrobacterium tumefaciens aconitase X (holo-form)
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-7cnr:
Crystal structure of Thermococcus kodakaraensis aconitase X (apo-form)
Method: X-RAY DIFFRACTION / Resolution: 3.39 Å

PDB-7cns:
Crystal structure of Thermococcus kodakaraensis aconitase X (holo-form)
Method: X-RAY DIFFRACTION / Resolution: 1.902 Å

PDB-7d2r:
Crystal structure of Agrobacterium tumefaciens aconitase X mutant - S449C/C510V
Method: X-RAY DIFFRACTION / Resolution: 2.005 Å

Chemicals

ChemComp-FES:
FE2/S2 (INORGANIC) CLUSTER

ChemComp-MG:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-G8X:
(2~{S},3~{R})-3-oxidanylpyrrolidine-2-carboxylic acid

ChemComp-F3S:
FE3-S4 CLUSTER

ChemComp-PMV:
(3R)-3-HYDROXY-3-METHYL-5-(PHOSPHONOOXY)PENTANOIC ACID

ChemComp-GOL:
GLYCEROL

ChemComp-NA:
Unknown entry

Source
  • agrobacterium tumefaciens (bacteria)
  • thermococcus kodakarensis (strain atcc baa-918 / jcm 12380 / kod1) (archaea)
KeywordsLYASE / cis-3-hydroxy-L-proline dehydratase / mevalonate 5-phosphate dehydratase

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