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Structure paper

TitleMechanistic insights into the three steps of poly(ADP-ribosylation) reversal.
Journal, issue, pagesNat Commun, Vol. 12, Page 4581-4581, Year 2021
Publish dateOct 2, 2020 (structure data deposition date)
AuthorsRack, J.G.M. / Liu, Q. / Zorzini, V. / Voorneveld, J. / Ariza, A. / Honarmand Ebrahimi, K. / Reber, J.M. / Krassnig, S.C. / Ahel, D. / van der Marel, G.A. ...Rack, J.G.M. / Liu, Q. / Zorzini, V. / Voorneveld, J. / Ariza, A. / Honarmand Ebrahimi, K. / Reber, J.M. / Krassnig, S.C. / Ahel, D. / van der Marel, G.A. / Mangerich, A. / McCullagh, J.S.O. / Filippov, D.V. / Ahel, I.
External linksNat Commun / PubMed:34321462
MethodsX-ray diffraction
Resolution1.31 - 2.5 Å
Structure data

PDB-7akr:
Human ADP-ribosylserine hydrolase ARH3 mutant E41A in complex with ADP-ribose dimer
Method: X-RAY DIFFRACTION / Resolution: 1.95 Å

PDB-7aks:
Human ADP-ribosylserine hydrolase ARH3 mutant E41A in complex with H2B-S7-mar peptide
Method: X-RAY DIFFRACTION / Resolution: 1.86 Å

PDB-7aqm:
ADP-ribosylserine hydrolase ARH3 of Latimeria chalumnae in complex with alpha-1''-O-methyl-ADP-ribose (meADPr)
Method: X-RAY DIFFRACTION / Resolution: 2.5 Å

PDB-7arw:
Structure of human ARH3 E41A bound to alpha-NAD+ and magnesium
Method: X-RAY DIFFRACTION / Resolution: 1.31 Å

Chemicals

ChemComp-MG:
Unknown entry

ChemComp-AR6:
[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL

ChemComp-CL:
Unknown entry

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-HOH:
WATER

ChemComp-ACT:
ACETATE ION

ChemComp-RVK:
Adenosine 5'-diphosphoric acid beta-[(3beta,4beta-dihydroxy-5beta-methoxytetrahydrofuran-2alpha-yl)methyl] estere

ChemComp-8NA:
alpha-Diphosphopyridine nucleotide

Source
  • homo sapiens (human)
  • latimeria chalumnae (coelacanth)
KeywordsHYDROLASE / ADP-RIBOSYLATION / ADP-RIBOSE / ADPRHL2 / ADP-RIBOSYLHYDROLASE LIKE 2 / SER-ADPR / SERINE-ADPR / ADP-RIBOSYL-L-SERINE / ADP-ribosylserine hydrolase / ARH3 / Latimeria chalumnae / alpha-1''-O-methyl-ADP ribose / ADP-ribose glycohydrolase / human / alpha-NAD+

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