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Structure paper

TitleNovel N7-Arylmethyl Substituted Dinucleotide mRNA 5' cap Analogs: Synthesis and Evaluation as Modulators of Translation.
Journal, issue, pagesPharmaceutics, Vol. 13, Year 2021
Publish dateApr 7, 2020 (structure data deposition date)
AuthorsWojcik, R. / Baranowski, M.R. / Markiewicz, L. / Kubacka, D. / Bednarczyk, M. / Baran, N. / Wojtczak, A. / Sikorski, P.J. / Zuberek, J. / Kowalska, J. / Jemielity, J.
External linksPharmaceutics / PubMed:34834356
MethodsX-ray diffraction
Resolution2.1954544917 - 2.67 Å
Structure data

PDB-6ylr:
Translation initiation factor 4E in complex with bn7GpppG mRNA 5' cap analog
Method: X-RAY DIFFRACTION / Resolution: 2.1954544917 Å

PDB-6ylt:
Translation initiation factor 4E in complex with 3-MeBn7GpppG mRNA 5' cap analog
Method: X-RAY DIFFRACTION / Resolution: 2.67 Å

PDB-6ylv:
Translation initiation factor 4E in complex with 4-Cl-Bn7GpppG mRNA 5' cap analog
Method: X-RAY DIFFRACTION / Resolution: 2.66005667871 Å

Chemicals

ChemComp-OYE:
bn7GpppG mRNA 5' cap analog

ChemComp-HOH:
WATER

ChemComp-P3E:
[[(2~{R},3~{S},4~{R},5~{R})-5-[2-azanyl-7-[(3-methylphenyl)methyl]-6-oxidanylidene-1~{H}-purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] hydrogen phosphate

ChemComp-OYW:
4-Cl-Bn7GpppG mRNA 5' cap analog

ChemComp-GOL:
GLYCEROL

Source
  • mus musculus (house mouse)
KeywordsTRANSLATION / cap analog / translation initiation / N7-benzyl dinucleotide / translation initiation factor / 3-MeBn7GpppG / protein-ligand complex / eIF4E / 4-Cl-Bn7GpppG / RNA binding protein

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