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Structure paper

TitleControlled dehydration, structural flexibility and gadolinium MRI contrast compound binding in the human plasma glycoprotein afamin.
Journal, issue, pagesActa Crystallogr D Struct Biol, Vol. 75, Page 1071-1083, Year 2019
Publish dateDec 15, 2017 (structure data deposition date)
AuthorsNaschberger, A. / Juyoux, P. / von Velsen, J. / Rupp, B. / Bowler, M.W.
External linksActa Crystallogr D Struct Biol / PubMed:31793901
MethodsX-ray diffraction
Resolution1.9 - 2.69 Å
Structure data

PDB-6fak:
Human afamin orthorhombic crystal form by controlled hydration
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

PDB-6rq7:
Gadolinium MRI contrast compound binding in human plasma glycoprotein afamin - resurrection of highly anisotropic data
Method: X-RAY DIFFRACTION / Resolution: 2.69 Å

Chemicals

ChemComp-NAG:
2-acetamido-2-deoxy-beta-D-glucopyranose

ChemComp-CL:
Unknown entry

ChemComp-NA:
Unknown entry

ChemComp-ACT:
ACETATE ION

ChemComp-P6G:
HEXAETHYLENE GLYCOL / precipitant*YM

ChemComp-PG4:
TETRAETHYLENE GLYCOL / precipitant*YM

ChemComp-PGE:
TRIETHYLENE GLYCOL

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-PG6:
1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-HOH:
WATER

ChemComp-GD:
GADOLINIUM ATOM

ChemComp-DO3:
10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID

Source
  • homo sapiens (human)
KeywordsTRANSPORT PROTEIN / human plasma / wnt binding / lipid binding / Afamin / glycoproteins / hydrophobic ligands / conformational variability / Wnt-signalling / gadoteridol

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