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Structure paper

TitleUreadepsipeptides as ClpP Activators.
Journal, issue, pagesAcs Infect Dis., Year 2019
Publish dateMay 26, 2017 (structure data deposition date)
AuthorsGriffith, E.C. / Zhao, Y. / Singh, A.P. / Conlon, B.P. / Tangallapally, R. / Shadrick, W.R. / Liu, J. / Wallace, M.J. / Yang, L. / Elmore, J.M. ...Griffith, E.C. / Zhao, Y. / Singh, A.P. / Conlon, B.P. / Tangallapally, R. / Shadrick, W.R. / Liu, J. / Wallace, M.J. / Yang, L. / Elmore, J.M. / Li, Y. / Zheng, Z. / Miller, D.J. / Cheramie, M.N. / Lee, R.B. / LaFleur, M.D. / Lewis, K. / Lee, R.E.
External linksAcs Infect Dis. / PubMed:31588734
MethodsX-ray diffraction
Resolution2.21 - 2.44 Å
Structure data

PDB-5vz2:
Structure of ClpP from Staphylococcus aureus in complex with Acyldepsipeptide
Method: X-RAY DIFFRACTION / Resolution: 2.26 Å

PDB-5w18:
Staphylococcus aureus ClpP in complex with (S)-N-((2R,6S,8aS,14aS,20S,23aS)-2,6-dimethyl-5,8,14,19,23-pentaoxooctadecahydro-1H,5H,14H,19H-pyrido[2,1-i]dipyrrolo[2,1-c:2',1'-l][1]oxa[4,7,10,13]tetraazacyclohexadecin-20-yl)-3-phenyl-2-(3-phenylureido)propanamide
Method: X-RAY DIFFRACTION / Resolution: 2.44 Å

PDB-6pka:
Structure of ClpP from Staphylococcus aureus in complex with ureadepsipeptide
Method: X-RAY DIFFRACTION / Resolution: 2.25 Å

PDB-6pmd:
Structure of ClpP from Staphylococcus aureus in complex with Acyldepsipeptide
Method: X-RAY DIFFRACTION / Resolution: 2.21 Å

Chemicals

ChemComp-HOH:
WATER

ChemComp-MPD:
(4S)-2-METHYL-2,4-PENTANEDIOL / precipitant*YM

Source
  • staphylococcus aureus (strain nctc 8325) (bacteria)
  • synthetic construct (others)
KeywordsHYDROLASE/ANTIBIOTIC / ClpP ADEP / HYDROLASE-ANTIBIOTIC complex / ClpP / UDEP / ANTIBIOTIC

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