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Structure paper

TitleX-ray crystallography-based structural elucidation of enzyme-bound intermediates along the 1-deoxy-d-xylulose 5-phosphate synthase reaction coordinate.
Journal, issue, pagesJ. Biol. Chem., Vol. 294, Page 12405-12414, Year 2019
Publish dateMay 5, 2019 (structure data deposition date)
AuthorsChen, P.Y. / DeColli, A.A. / Freel Meyers, C.L. / Drennan, C.L.
External linksJ. Biol. Chem. / PubMed:31239351
MethodsX-ray diffraction
Resolution1.937 - 2.398 Å
Structure data

PDB-6ouv:
1-deoxy-D-xylulose 5-phosphate synthase (DXPS) from Deinococcus radiodurans with methylacetylphosphonate (MAP) bound
Method: X-RAY DIFFRACTION / Resolution: 1.937 Å

PDB-6ouw:
1-deoxy-D-xylulose 5-phosphate synthase (DXPS) from Deinococcus radiodurans with enamine intermediate bound
Method: X-RAY DIFFRACTION / Resolution: 2.398 Å

Chemicals

ChemComp-TDK:
3-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-2-{(1S)-1-HYDROXY-1-[(R)-HYDROXY(METHOXY)PHOSPHORYL]ETHYL}-5-(2-{[(S)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}ETHYL)-4-METHYL-1,3-THIAZOL-3-IUM

ChemComp-MG:
Unknown entry

ChemComp-NA:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-HTL:
2-ACETYL-THIAMINE DIPHOSPHATE

Source
  • deinococcus radiodurans (radioresistant)
KeywordsTRANSFERASE / 1-deoxy-D-xylulose 5-phosphate synthase / DXPS / thiamine diphosphate / thiamine pyrophosphate / ThDP / TPP / changes / the MEP pathway

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