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Structure paper

TitleStructural basis for adenylation and thioester bond formation in the ubiquitin E1.
Journal, issue, pagesProc. Natl. Acad. Sci. USA, Vol. 116, Page 15475-15484, Year 2019
Publish dateMar 8, 2019 (structure data deposition date)
AuthorsHann, Z.S. / Ji, C. / Olsen, S.K. / Lu, X. / Lux, M.C. / Tan, D.S. / Lima, C.D.
External linksProc. Natl. Acad. Sci. USA / PubMed:31235585
MethodsX-ray diffraction
Resolution2.604 - 3.153 Å
Structure data

PDB-6o82:
S. pombe ubiquitin E1 complex with a ubiquitin-AMP mimic
Method: X-RAY DIFFRACTION / Resolution: 2.604 Å

PDB-6o83:
S. pombe ubiquitin E1~ubiquitin-AMP tetrahedral intermediate mimic
Method: X-RAY DIFFRACTION / Resolution: 3.153 Å

Chemicals

ChemComp-MG:
Unknown entry

ChemComp-POP:
PYROPHOSPHATE 2-

ChemComp-SO4:
SULFATE ION

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-JZU:
5'-deoxy-5'-(sulfamoylamino)adenosine

ChemComp-HOH:
WATER

ChemComp-CA:
Unknown entry

ChemComp-TRS:
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL / pH buffer*YM

ChemComp-MPD:
(4S)-2-METHYL-2,4-PENTANEDIOL / precipitant*YM

ChemComp-VMX:
5'-{[(3-aminopropyl)sulfonyl]amino}-5'-deoxyadenosine

Source
  • schizosaccharomyces pombe (strain 972 / atcc 24843) (yeast)
KeywordsLIGASE/PROTEIN BINDING / THIOESTER / ADENYLATION / INHIBITOR / ACYL-ADENYLATE INTERMEDIATE / ACETYLATION / LIGASE / NUCLEUS / PHOSPHOPROTEIN / UBL CONJUGATION PATHWAY / ATP-BINDING / NUCLEOTIDE-BINDING / CYTOPLASM / ISOPEPTIDE BOND / LIGASE-PROTEIN BINDING complex / TETRAHEDRAL INTERMEDIATE

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