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Structure paper

TitleMolecular basis for the faithful replication of 5-methylcytosine and its oxidized forms by DNA polymerase beta.
Journal, issue, pagesJ. Biol. Chem., Vol. 294, Page 7194-7201, Year 2019
Publish dateNov 14, 2018 (structure data deposition date)
AuthorsHoward, M.J. / Foley, K.G. / Shock, D.D. / Batra, V.K. / Wilson, S.H.
External linksJ. Biol. Chem. / PubMed:30885943
MethodsX-ray diffraction
Resolution2.1 - 2.6 Å
Structure data

PDB-6n2r:
Binary complex crystal structure of DNA polymerase Beta with 5-carboxy-dC (5-caC) at the templating position
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-6n2s:
Ternary complex crystal structure of DNA polymerase Beta with 5-carboxy-dC (5-caC) at the templating position
Method: X-RAY DIFFRACTION / Resolution: 2.457 Å

PDB-6n2t:
Ternary complex crystal structure of DNA polymerase Beta with 5-hydroxymethyl-dC (5-hmC) at the templating position
Method: X-RAY DIFFRACTION / Resolution: 2.6 Å

Chemicals

ChemComp-NA:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-MG:
Unknown entry

ChemComp-1GC:
2'-deoxy-5'-O-[(R)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]guanosine

Source
  • homo sapiens (human)
Keywordsgene regulation/dna / DNA Polymerase Beta / Conformational Change / enzyme mechanism / epigenetic modifications / GENE REGULATION / gene regulation-dna complex / transferase-dna complex

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