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Structure paper

TitleFucosylated inhibitors of recently identified bangle lectin from Photorhabdus asymbiotica.
Journal, issue, pagesSci Rep, Vol. 9, Page 14904-14904, Year 2019
Publish dateJan 16, 2018 (structure data deposition date)
AuthorsPaulikova, G. / Houser, J. / Kasakova, M. / Oroszova, B. / Bertolotti, B. / Parkan, K. / Moravcova, J. / Wimmerova, M.
External linksSci Rep / PubMed:31624296
MethodsX-ray diffraction
Resolution1.78 - 2.34 Å
Structure data

PDB-6fhx:
Photorhabdus asymbiotica lectin (PHL) in complex with synthetic C-fucoside
Method: X-RAY DIFFRACTION / Resolution: 2.34 Å

PDB-6fhy:
Photorhabdus asymbiotica lectin (PHL) in complex with synthetic C-fucoside
Method: X-RAY DIFFRACTION / Resolution: 1.86 Å

PDB-6flu:
Photorhabdus asymbiotica lectin (PHL) in complex with synthetic C-fucoside
Method: X-RAY DIFFRACTION / Resolution: 1.78 Å

Chemicals

ChemComp-NA:
Unknown entry

ChemComp-CL:
Unknown entry

ChemComp-DSQ:
(2~{S},3~{S},4~{R},5~{S},6~{S})-2-[[(2~{R},3~{S},4~{R},6~{R})-2-(hydroxymethyl)-3,6-bis(oxidanyl)oxan-4-yl]methyl]-6-methyl-oxane-3,4,5-triol

ChemComp-HOH:
WATER

ChemComp-DS8:
(2~{S},3~{S},4~{R},5~{S},6~{S})-2-[[(2~{S},4~{R},6~{R})-2-(hydroxymethyl)-6-oxidanyl-oxan-4-yl]methyl]-6-methyl-oxane-3,4,5-triol

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-DTK:
(2~{S},3~{S},4~{R},5~{S},6~{S})-2-[[(2~{R},3~{S},4~{R},6~{S})-2-(hydroxymethyl)-6-methoxy-3-oxidanyl-oxan-4-yl]methyl]-6-methyl-oxane-3,4,5-triol

Source
  • photorhabdus asymbiotica (bacteria)
  • photorhabdus asymbiotica subsp. asymbiotica (strain atcc 43949 / 3105-77) (bacteria)
KeywordsSUGAR BINDING PROTEIN / lectin / seven-bladed beta-propeller / C-fucoside / (S)-2-Hydroxy-1-phenylethyl 2 / 3-dideoxy-3-C-[(a-L- fucopyranosyl)methyl]-b-D-arabino-hexopyranoside / 4.6. 4(S)-2-Hydroxy-1-phenylethyl 2 / 3 / 4-trideoxy-3-C-[(a-L- fucopyranosyl)methyl]-b-D-threo-hexopyranoside / Methyl 2 / 3-dideoxy-3-C-[(a-L-fucopyranosyl)methyl]-a-D- arabino-hexopyranoside

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