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Structure paper

TitleDiscovery of Small Molecule Antagonists of the USP5 Zinc Finger Ubiquitin-Binding Domain.
Journal, issue, pagesJ. Med. Chem., Vol. 62, Page 10144-10155, Year 2019
Publish dateJun 28, 2018 (structure data deposition date)
AuthorsMann, M.K. / Franzoni, I. / de Freitas, R.F. / Tempel, W. / Houliston, S. / Smith, L. / Vedadi, M. / Arrowsmith, C.H. / Harding, R.J. / Schapira, M.
External linksJ. Med. Chem. / PubMed:31663737
MethodsX-ray diffraction
Resolution1.65 - 2.1 Å
Structure data

PDB-6dxh:
Structure of USP5 zinc-finger ubiquitin binding domain co-crystallized with 4-(4-tert-butylphenyl)-4-oxobutanoate
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-6dxt:
Structure of USP5 zinc-finger ubiquitin binding domain co-crystallized with 3-(5-phenyl-1,3,4-oxadiazol-2-yl)propanoate
Method: X-RAY DIFFRACTION / Resolution: 1.95 Å

PDB-6nft:
Structure of USP5 zinc-finger ubiquitin binding domain co-crystallized with (4-oxoquinazolin-3(4H)-yl)acetic acid
Method: X-RAY DIFFRACTION / Resolution: 1.65 Å

PDB-6p9g:
Structure of USP5 zinc-finger ubiquitin binding domain co-crystallized with 2-(4-oxoquinazolin-3(4H)-yl)propanoic acid
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

Chemicals

ChemComp-UNX:
Unknown entry

ChemComp-ZN:
Unknown entry

ChemComp-HH4:
4-(4-tert-butylphenyl)-4-oxobutanoic acid

ChemComp-HOH:
WATER

ChemComp-HHY:
3-(5-phenyl-1,3,4-oxadiazol-2-yl)propanoic acid

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-KKG:
(4-oxoquinazolin-3(4H)-yl)acetic acid

ChemComp-O4Y:
(2R)-2-(4-oxoquinazolin-3(4H)-yl)propanoic acid

Source
  • homo sapiens (human)
KeywordsHYDROLASE / DEUBIQUITINASE / USP5 / UBIQUITIN / STRUCTURAL GENOMICS CONSORTIUM / SGC / Structural Genomics / PROTEIN BINDING / ubiquitin binding domain

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